skills/claude-scientific-skills
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scientific-databases/ena-database/SKILL.md
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@@ -7,7 +7,20 @@ description: "Access European Nucleotide Archive via API/FTP. Retrieve DNA/RNA s
## Overview
This skill provides tools and guidance for working with the European Nucleotide Archive (ENA), a comprehensive public repository for nucleotide sequence data and associated metadata. ENA serves as a global platform for managing, sharing, and accessing DNA/RNA sequences, raw reads, genome assemblies, and functional annotations.
The European Nucleotide Archive (ENA) is a comprehensive public repository for nucleotide sequence data and associated metadata. Access and query DNA/RNA sequences, raw reads, genome assemblies, and functional annotations through REST APIs and FTP for genomics and bioinformatics pipelines.
## When to Use This Skill
This skill should be used when:
- Retrieving nucleotide sequences or raw sequencing reads by accession
- Searching for samples, studies, or assemblies by metadata criteria
- Downloading FASTQ files or genome assemblies for analysis
- Querying taxonomic information for organisms
- Accessing sequence annotations and functional data
- Integrating ENA data into bioinformatics pipelines
- Performing cross-reference searches to related databases
- Bulk downloading datasets via FTP or Aspera
## Core Capabilities