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scientific-integrations/opentrons-integration/SKILL.md
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---
name: opentrons-integration
description: "Opentrons lab automation. Write Protocol API v2 protocols for Flex/OT-2 robots, liquid handling, hardware modules (heater-shaker, thermocycler), labware management, for automated pipetting workflows."
description: "Lab automation platform for Flex/OT-2 robots. Write Protocol API v2 protocols, liquid handling, hardware modules (heater-shaker, thermocycler), labware management, for automated pipetting workflows."
---
# Opentrons Integration
## Overview
Opentrons provides a Python-based automation platform for laboratory protocols using Flex and OT-2 robots. This skill enables creation and management of Python Protocol API v2 protocols for automated liquid handling, hardware module control, and complex laboratory workflows.
Opentrons is a Python-based lab automation platform for Flex and OT-2 robots. Write Protocol API v2 protocols for liquid handling, control hardware modules (heater-shaker, thermocycler), manage labware, for automated pipetting workflows.
## When to Use This Skill
This skill should be used when:
- Writing Opentrons Protocol API v2 protocols in Python
- Automating liquid handling workflows on Flex or OT-2 robots
- Controlling hardware modules (temperature, magnetic, heater-shaker, thermocycler)
- Setting up labware configurations and deck layouts
- Implementing complex pipetting operations (serial dilutions, plate replication, PCR setup)
- Managing tip usage and optimizing protocol efficiency
- Working with multi-channel pipettes for 96-well plate operations
- Simulating and testing protocols before robot execution
## Core Capabilities