skills/claude-scientific-skills
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Improve database description for more reliable skill calling

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Timothy Kassis
2025-10-20 16:02:48 -07:00
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scientific-databases/hmdb-database/SKILL.md
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name: hmdb-database
description: Work with the Human Metabolome Database (HMDB) for metabolomics research, biomarker discovery, and metabolite identification. Use this skill when searching for metabolite information, querying human metabolic pathways, identifying biomarkers, analyzing metabolomics data, or accessing metabolite properties, structures, and clinical associations. The skill covers web-based searches, downloadable datasets, and programmatic access methods.
description: Access and analyze the Human Metabolome Database (HMDB) for comprehensive metabolite information, metabolomics research, biomarker discovery, metabolite identification, pathway analysis, and clinical associations. Use this skill for: searching metabolites by name, HMDB ID, structure, or spectral data; retrieving chemical properties (SMILES, InChI, molecular weight, formula); accessing clinical biomarker data and disease associations; downloading bulk datasets (XML, SDF, CSV formats); analyzing metabolic pathways and enzyme associations; performing spectral matching for metabolite identification; accessing concentration ranges in biological fluids; integrating with external databases (KEGG, PubChem, ChEBI); and supporting untargeted metabolomics workflows. HMDB contains 220,945+ metabolite entries with chemical, biological, clinical, and analytical data including NMR/MS spectra, pathway information, and biomarker associations for human metabolomics research.
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# HMDB Database