skills/claude-scientific-skills
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Improve database description for more reliable skill calling

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Timothy Kassis
2025-10-20 16:02:48 -07:00
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scientific-databases/string-database/SKILL.md
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name: string-database
description: Work with the STRING (Search Tool for the Retrieval of Interacting Genes/Proteins) database for protein-protein interaction network analysis, functional enrichment, and interaction partner discovery. Use this skill when analyzing protein interactions, building protein networks, performing pathway enrichment on protein sets, finding interaction partners, testing network connectivity significance, or retrieving protein homology data. Covers 5000+ genomes with 59.3 million proteins and 20+ billion interactions from experimental data, computational prediction, and text-mining.
description: Access and analyze the STRING database for comprehensive protein-protein interaction (PPI) network analysis, functional enrichment, pathway analysis, and protein interaction discovery. This skill enables querying protein interactions, building interaction networks, performing Gene Ontology (GO) enrichment, KEGG pathway analysis, Pfam domain enrichment, protein-protein interaction enrichment testing, network visualization, interaction partner discovery, homology analysis, and identifier mapping across 5000+ species. Use for analyzing protein lists from experiments (differential expression, proteomics, mass spectrometry), validating protein networks, discovering novel protein interactions, pathway enrichment analysis, functional annotation, network connectivity analysis, cross-species protein comparison, protein family analysis, hub protein identification, network expansion from seed proteins, and systems biology studies. Provides access to 59.3 million proteins and 20+ billion interactions from experimental data, computational predictions, text-mining, and curated databases. Supports confidence scoring, multiple evidence types (experimental, coexpression, phylogenetic, genomic context), physical vs functional networks, and visualization capabilities.
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# STRING Database