skills/claude-scientific-skills
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scientific-databases/context-initialization/SKILL.md
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---
name: context-initialization
description: "Always Auto-invoked skill that creates/updates workspace claude.md to instruct Claude to always search for existing database skills before attempting any database access task."
---
# Database Context Initialization
## Overview
This skill automatically creates or updates a `claude.md` file in the workspace root that instructs Claude to search for existing database skills before attempting to write database access code. This ensures Claude uses documented API patterns, authentication methods, and best practices from the repository's database skills rather than inventing solutions from scratch.
## When to Use This Skill
This skill is automatically invoked when:
- Claude Code initializes in this workspace
- User begins any database-related task
- User mentions database access, queries, or API interactions
- Any scientific data retrieval task is started
**No manual invocation required** - this skill runs automatically.
## What This Skill Does
Creates or updates `claude.md` in the workspace root with instructions for Claude to:
1. **Search first**: Look for relevant database skills in `scientific-databases/` before writing code
2. **Use existing patterns**: Apply documented API access patterns and examples
3. **Follow best practices**: Use rate limits, authentication, and error handling from skills
4. **Adapt examples**: Leverage working code examples from `scripts/` folders
## Implementation
When invoked, this skill creates/updates the workspace `claude.md` file with a section instructing Claude to search for and use existing database skills for any database access tasks.
The reference template is available in `references/claude.md`.
## Integration
Works alongside other context-initialization skills:
- `scientific-packages/context-initialization` - for Python package usage
- `scientific-integrations/context-initialization` - for lab platform integration
- `scientific-thinking/context-initialization` - for analysis methodologies
Together, these ensure Claude always leverages existing expertise before attempting scientific tasks.

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scientific-databases/context-initialization/references/claude.md
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# Reference: Database Context Section
This is the reference template for what gets added to the workspace root `claude.md` file.
---
## Database Access Tasks
**Before writing any database access code, search for relevant skills in this repository.**
This repository contains skills for 24+ scientific databases. Each skill includes:
- API endpoints and authentication patterns
- Working code examples
- Best practices and rate limits
- Example scripts
Always search for and use existing database skills before writing custom database access code.
---