skills/claude-scientific-skills
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Added full support for ToolUniverse. Claude Code can now use the tools it provide as it needs without the MCP being a gateway.

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Timothy Kassis
2025-10-22 14:59:27 -07:00
parent 0b5a648e98
commit 0943c243bb
12 changed files with 1823 additions and 7 deletions
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README.md
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@@ -2,7 +2,7 @@
[![License: PolyForm Noncommercial 1.0.0](https://img.shields.io/badge/License-PolyForm%20Noncommercial-blue.svg)](LICENSE.md)
[![GitHub Stars](https://img.shields.io/github/stars/K-Dense-AI/claude-scientific-skills?style=social)](https://github.com/K-Dense-AI/claude-scientific-skills)
[![Skills](https://img.shields.io/badge/Skills-72%2B-brightgreen.svg)](#what-s-included)
[![Skills](https://img.shields.io/badge/Skills-73%2B-brightgreen.svg)](#what-s-included)
[![Workflows](https://img.shields.io/badge/Workflows-122-orange.svg)](#what-s-included)
A comprehensive collection of ready-to-use scientific skills for Claude, curated by the K-Dense team.
@@ -45,7 +45,7 @@ These skills enable Claude to work with specialized scientific libraries and dat
| Category | Count | Description |
|----------|-------|-------------|
| 📊 **Scientific Databases** | 24 | PubMed, PubChem, UniProt, ChEMBL, COSMIC, AlphaFold DB, and more |
| 🔬 **Scientific Packages** | 42 | BioPython, RDKit, PyTorch, Scanpy, and specialized tools |
| 🔬 **Scientific Packages** | 43 | BioPython, RDKit, PyTorch, Scanpy, and specialized tools |
| 🔌 **Scientific Integrations** | 6 | Benchling, DNAnexus, Opentrons, LabArchives, LatchBio, OMERO |
| 🎯 **Context Initialization** | 1 | Auto-invoked skill to ensure Claude uses existing skills effectively |
| 📚 **Documented Workflows** | 122 | Ready-to-use examples and reference materials |
@@ -78,7 +78,7 @@ Then, to install a specific set of skills:
2. Select **claude-scientific-skills**
3. Choose from:
- `scientific-databases` - Access to 24 scientific databases
- `scientific-packages` - 40 specialized Python packages
- `scientific-packages` - 43 specialized Python packages
- `scientific-thinking` - Analysis tools and document processing
- `scientific-integrations` - Lab automation and platform integrations
- `scientific-context-initialization` - Ensures Claude searches for and uses existing skills
@@ -247,7 +247,7 @@ network visualizations. Finally, search GEO for similar expression patterns acro
---
### 🔬 Scientific Packages
**42 specialized Python packages** organized by domain.
**43 specialized Python packages** organized by domain.
📖 **[Full Package Documentation →](docs/scientific-packages.md)**
@@ -296,11 +296,12 @@ network visualizations. Finally, search GEO for similar expression patterns acro
</details>
<details>
<summary><strong>Additional Packages (5 packages)</strong></summary>
<summary><strong>Additional Packages (6 packages)</strong></summary>
- BIOMNI (Multi-omics), ETE Toolkit (Phylogenetics)
- Paper-2-Web (Academic paper dissemination and presentation)
- scikit-bio (Sequence analysis), Zarr (Array storage)
- scikit-bio (Sequence analysis), ToolUniverse (600+ scientific tool ecosystem)
- Zarr (Array storage)
</details>