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Update imaging-data-commons skill to v1.4.0
Release notes: - Bump idc-index requirement to 0.11.10 - digital_pathology_guide.md: add "Filter by specimen preparation" section with H&E staining and FFPE/frozen embedding query examples (array column syntax) - digital_pathology_guide.md: add "Identifying Tumor vs Normal Slides" section covering primaryAnatomicStructureModifier_CodeMeaning (all SM collections) and TCGA barcode parsing via ContainerIdentifier (TCGA-specific) - digital_pathology_guide.md: add "Finding Pre-Computed Analysis Results" section for discovering derived datasets (nuclei segmentations, TIL maps) via analysis_results_index - digital_pathology_guide.md: document per-annotation measurements in DICOM ANN objects (extraction via highdicom post-download, link to tutorial notebook) - digital_pathology_guide.md: update sm_index description with new columns (container/slide ID, tissue type, anatomic structure, diagnosis) Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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@@ -3,9 +3,9 @@ name: imaging-data-commons
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description: Query and download public cancer imaging data from NCI Imaging Data Commons using idc-index. Use for accessing large-scale radiology (CT, MR, PET) and pathology datasets for AI training or research. No authentication required. Query by metadata, visualize in browser, check licenses.
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license: This skill is provided under the MIT License. IDC data itself has individual licensing (mostly CC-BY, some CC-NC) that must be respected when using the data.
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metadata:
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version: 1.3.1
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version: 1.4.0
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skill-author: Andrey Fedorov, @fedorov
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idc-index: "0.11.9"
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idc-index: "0.11.10"
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idc-data-version: "v23"
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repository: https://github.com/ImagingDataCommons/idc-claude-skill
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---
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@@ -25,7 +25,7 @@ Use the `idc-index` Python package to query and download public cancer imaging d
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```python
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import idc_index
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REQUIRED_VERSION = "0.11.9" # Must match metadata.idc-index in this file
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REQUIRED_VERSION = "0.11.10" # Must match metadata.idc-index in this file
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installed = idc_index.__version__
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if installed < REQUIRED_VERSION:
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@@ -229,7 +229,7 @@ print(client.get_idc_version()) # Should return "v23"
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```
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If you see an older version, upgrade with: `pip install --upgrade idc-index`
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**Tested with:** idc-index 0.11.9 (IDC data version v23)
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**Tested with:** idc-index 0.11.10 (IDC data version v23)
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**Optional (for data analysis):**
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```bash
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