skills/claude-scientific-skills
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Add support for both geniml and gtars

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Timothy Kassis
2025-11-04 10:22:03 -08:00
parent 4ad4f9970f
commit 1225ddecf1
16 changed files with 2649 additions and 6 deletions
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README.md
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# Claude Scientific Skills
[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](LICENSE.md)
[![Skills](https://img.shields.io/badge/Skills-114-brightgreen.svg)](#what-s-included)
[![Skills](https://img.shields.io/badge/Skills-116-brightgreen.svg)](#what-s-included)
[![Equivalent Tools](https://img.shields.io/badge/Equivalent_Tools-1002-blue.svg)](#what-s-included)
A comprehensive collection of ready-to-use scientific skills for Claude, curated by the K-Dense team.
@@ -47,7 +47,7 @@ These skills enable Claude to work with specialized scientific libraries and dat
| Category | Count | Description |
|----------|-------|-------------|
| 📊 **Scientific Databases** | 26 | PubMed, PubChem, UniProt, ChEMBL, COSMIC, DrugBank, AlphaFold DB, bioRxiv, and more |
| 🔬 **Scientific Packages** | 65 | BioPython, RDKit, PyTorch, Scanpy, scvi-tools, ESM, NetworkX, SimPy, pydicom, PyHealth, Data Commons, histolab, LaminDB, PathML, PyLabRobot, HypoGeniC, MarkItDown, PufferLib, Stable Baselines3, Vaex, Denario, and more |
| 🔬 **Scientific Packages** | 67 | BioPython, RDKit, PyTorch, Scanpy, scvi-tools, ESM, NetworkX, SimPy, pydicom, PyHealth, Data Commons, histolab, LaminDB, PathML, PyLabRobot, HypoGeniC, MarkItDown, PufferLib, Stable Baselines3, Vaex, Denario, geniml, gtars, and more |
| 🔌 **Scientific Integrations** | 7 | Benchling, DNAnexus, Opentrons, LabArchives, LatchBio, OMERO, Protocols.io |
| 🛠️ **Scientific Helpers** | 2 | Context initialization and resource detection utilities |
| 📚 **Documented Workflows** | 122 | Ready-to-use examples and reference materials |
@@ -313,15 +313,15 @@ results, conclusions and providing recommendations."
---
### 🔬 Scientific Packages
**64 specialized Python packages** organized by domain.
**67 specialized Python packages** organized by domain.
📖 **[Full Package Documentation →](docs/scientific-packages.md)**
<details>
<summary><strong>Bioinformatics & Genomics (12 packages)</strong></summary>
<summary><strong>Bioinformatics & Genomics (14 packages)</strong></summary>
- AnnData, Arboreto, BioPython, BioServices, Cellxgene Census
- deepTools, FlowIO, gget, pysam, PyDESeq2, Scanpy, scvi-tools
- deepTools, FlowIO, gget, geniml, gtars, pysam, PyDESeq2, Scanpy, scvi-tools
</details>