skills/claude-scientific-skills
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Add multiple scientific databases to README

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Timothy Kassis
2025-10-19 18:55:17 -07:00
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README.md
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@@ -118,6 +118,28 @@ You can use Anthropic's pre-built skills, and upload custom skills, via the Clau
## TODO: Future Scientific Capabilities ## TODO: Future Scientific Capabilities
### Scientific Databases
- **ArrayExpress** - EMBL-EBI gene expression database with functional genomics experiments
- **BioGRID** - Biological General Repository for Interaction Datasets (protein, genetic, and chemical interactions)
- **DAVID** - Database for Annotation, Visualization and Integrated Discovery for functional enrichment analysis
- **dbSNP** - NCBI's database of single nucleotide polymorphisms and short genetic variations
- **DrugBank** - Comprehensive drug and drug target database with pharmacological and pharmaceutical data
- **Ensembl** - Genome browser with annotation, comparative genomics, and variant data
- **GenBank** - NIH genetic sequence database (part of NCBI but with specific access patterns)
- **GWAS Catalog** - NHGRI-EBI catalog of published genome-wide association studies
- **HMDB** - Human Metabolome Database with detailed metabolite information
- **InterPro** - Protein sequence analysis and classification with functional annotations
- **MetaboLights** - EMBL-EBI metabolomics database with experimental data and metadata
- **Metabolomics Workbench** - NIH Common Fund metabolomics data repository
- **OMIM** - Online Mendelian Inheritance in Man for genetic disorders and genes
- **Pfam** - Protein families database with multiple sequence alignments and HMMs
- **PharmGKB** - Pharmacogenomics Knowledge Base linking genetic variation to drug response
- **Reactome** - Curated pathway database with biological processes and molecular interactions
- **RefSeq** - NCBI's non-redundant reference sequence database
- **TCGA** - The Cancer Genome Atlas with multi-omic cancer genomics data
- **UCSC Genome Browser** - Genomic data visualization and custom track integration
- **WikiPathways** - Community-curated biological pathway database
### Bioinformatics & Genomics ### Bioinformatics & Genomics
- **pysam** - Interface to SAM/BAM/CRAM format files - **pysam** - Interface to SAM/BAM/CRAM format files
- **pybedtools** - Wrapper for BEDTools genome arithmetic operations - **pybedtools** - Wrapper for BEDTools genome arithmetic operations