Add skill author

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Timothy Kassis
2025-12-31 13:57:51 -08:00
parent 57bde764fe
commit 2621ee329d
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MIT License
Copyright (c) 2025 Shen Lab
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.

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---
name: neuropixels-analysis
description: "Neuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4 spike sorting, quality metrics, Allen/IBL curation, AI-assisted visual analysis, for Neuropixels 1.0/2.0 extracellular electrophysiology. Use when working with neural recordings, spike sorting, extracellular electrophysiology, or when the user mentions Neuropixels, SpikeGLX, Open Ephys, Kilosort, quality metrics, or unit curation."
license: MIT License
metadata:
skill-author: K-Dense Inc.
---
# Neuropixels Data Analysis
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| Topic | Reference |
|-------|-----------|
| Full workflow | [reference/standard_workflow.md](reference/standard_workflow.md) |
| API reference | [reference/api_reference.md](reference/api_reference.md) |
| Plotting guide | [reference/plotting_guide.md](reference/plotting_guide.md) |
| Preprocessing | [PREPROCESSING.md](PREPROCESSING.md) |
| Spike sorting | [SPIKE_SORTING.md](SPIKE_SORTING.md) |
| Motion correction | [MOTION_CORRECTION.md](MOTION_CORRECTION.md) |
| Quality metrics | [QUALITY_METRICS.md](QUALITY_METRICS.md) |
| Automated curation | [AUTOMATED_CURATION.md](AUTOMATED_CURATION.md) |
| AI-assisted curation | [AI_CURATION.md](AI_CURATION.md) |
| Waveform analysis | [ANALYSIS.md](ANALYSIS.md) |
| Full workflow | [references/standard_workflow.md](reference/standard_workflow.md) |
| API reference | [references/api_reference.md](reference/api_reference.md) |
| Plotting guide | [references/plotting_guide.md](reference/plotting_guide.md) |
| Preprocessing | [references/PREPROCESSING.md](reference/PREPROCESSING.md) |
| Spike sorting | [references/SPIKE_SORTING.md](reference/SPIKE_SORTING.md) |
| Motion correction | [references/MOTION_CORRECTION.md](reference/MOTION_CORRECTION.md) |
| Quality metrics | [references/QUALITY_METRICS.md](reference/QUALITY_METRICS.md) |
| Automated curation | [references/AUTOMATED_CURATION.md](reference/AUTOMATED_CURATION.md) |
| AI-assisted curation | [references/AI_CURATION.md](reference/AI_CURATION.md) |
| Waveform analysis | [references/ANALYSIS.md](reference/ANALYSIS.md) |
## Installation