skills/claude-scientific-skills
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Updated installation instructions for all skills to always use uv pip install

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Timothy Kassis
2025-11-16 15:34:52 -08:00
parent d94f21c51f
commit 2fc3e6a88e
82 changed files with 179 additions and 290 deletions
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scientific-skills/arboreto/SKILL.md
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@@ -15,7 +15,7 @@ Arboreto is a computational library for inferring gene regulatory networks (GRNs
Install arboreto:
```bash
pip install arboreto
uv pip install arboreto
```
Basic GRN inference:
@@ -114,21 +114,8 @@ network = grnboost2(expression_data=matrix, client_or_address=client)
## Installation
**Recommended (Conda)**:
```bash
conda install -c bioconda arboreto
```
**Alternative (pip)**:
```bash
pip install arboreto
```
**For isolated environment**:
```bash
conda create --name arboreto-env
conda activate arboreto-env
conda install -c bioconda arboreto
uv pip install arboreto
```
**Dependencies**: scipy, scikit-learn, numpy, pandas, dask, distributed