skills/claude-scientific-skills
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Updated installation instructions for all skills to always use uv pip install

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Timothy Kassis
2025-11-16 15:34:52 -08:00
parent d94f21c51f
commit 2fc3e6a88e
82 changed files with 179 additions and 290 deletions
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8
scientific-skills/etetoolkit/SKILL.md
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@@ -358,7 +358,7 @@ Install ETE toolkit:
```bash
# Basic installation
pip install ete3
uv pip install ete3
# With external dependencies for rendering (optional but recommended)
# On macOS:
@@ -368,7 +368,7 @@ brew install qt@5
sudo apt-get install python3-pyqt5 python3-pyqt5.qtsvg
# For full features including GUI
pip install ete3[gui]
uv pip install ete3[gui]
```
**First-time NCBI Taxonomy setup:**
@@ -536,10 +536,10 @@ Load these references when detailed information is needed:
```bash
# If "ModuleNotFoundError: No module named 'ete3'"
pip install ete3
uv pip install ete3
# For GUI and rendering issues
pip install ete3[gui]
uv pip install ete3[gui]
```
**Rendering issues:**