skills/claude-scientific-skills
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Updated installation instructions for all skills to always use uv pip install

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Timothy Kassis
2025-11-16 15:34:52 -08:00
parent d94f21c51f
commit 2fc3e6a88e
82 changed files with 179 additions and 290 deletions
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scientific-skills/pydicom/SKILL.md
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@@ -27,17 +27,17 @@ Use this skill when working with:
Install pydicom and common dependencies:
```bash
pip install pydicom
pip install pillow # For image format conversion
pip install numpy # For pixel array manipulation
pip install matplotlib # For visualization
uv pip install pydicom
uv pip install pillow # For image format conversion
uv pip install numpy # For pixel array manipulation
uv pip install matplotlib # For visualization
```
For handling compressed DICOM files, additional packages may be needed:
```bash
pip install pylibjpeg pylibjpeg-libjpeg pylibjpeg-openjpeg # JPEG compression
pip install python-gdcm # Alternative compression handler
uv pip install pylibjpeg pylibjpeg-libjpeg pylibjpeg-openjpeg # JPEG compression
uv pip install python-gdcm # Alternative compression handler
```
## Core Workflows
@@ -397,7 +397,7 @@ Detailed reference information is available in the `references/` directory:
## Common Issues and Solutions
**Issue: "Unable to decode pixel data"**
- Solution: Install additional compression handlers: `pip install pylibjpeg pylibjpeg-libjpeg python-gdcm`
- Solution: Install additional compression handlers: `uv pip install pylibjpeg pylibjpeg-libjpeg python-gdcm`
**Issue: "AttributeError" when accessing tags**
- Solution: Check if attribute exists with `hasattr(ds, 'AttributeName')` or use `ds.get('AttributeName', default)`