skills/claude-scientific-skills
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Add neuropixels-analysis skill for extracellular electrophysiology

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Adds comprehensive toolkit for analyzing Neuropixels high-density neural
recordings using SpikeInterface, Allen Institute, and IBL best practices.

Features:
- Data loading from SpikeGLX, Open Ephys, and NWB formats
- Preprocessing pipelines (filtering, phase shift, CAR, bad channel detection)
- Motion/drift estimation and correction
- Spike sorting integration (Kilosort4, SpykingCircus2, Mountainsort5)
- Quality metrics computation (SNR, ISI violations, presence ratio)
- Automated curation using Allen/IBL criteria
- AI-assisted visual curation for uncertain units
- Export to Phy and NWB formats

Supports Neuropixels 1.0 and 2.0 probes.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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@@ -357,7 +357,7 @@ This repository contains **125+ scientific skills** organized across multiple do
#### 🏥 **Clinical Research & Precision Medicine** (8+ skills)
- Clinical databases: ClinicalTrials.gov, ClinVar, ClinPGx, COSMIC, FDA Databases
- Healthcare AI: PyHealth, NeuroKit2
- Healthcare AI: PyHealth, NeuroKit2, Neuropixels-Analysis
- Variant analysis: Ensembl, NCBI Gene
#### 🖼️ **Medical Imaging & Digital Pathology** (3 skills)