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Fix descriptions to adhere to character limits

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Timothy Kassis
2025-10-21 09:33:30 -07:00
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scientific-packages/scanpy/SKILL.md
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---
name: scanpy
description: "Use this skill for comprehensive single-cell RNA-seq analysis with scanpy. Essential for: loading single-cell data (.h5ad, 10X Genomics, CSV, HDF5), performing quality control and filtering, normalization and preprocessing, dimensionality reduction (PCA, UMAP, t-SNE), clustering (Leiden, Louvain), marker gene identification, cell type annotation, trajectory inference, differential expression analysis, batch correction, gene set scoring, creating publication-quality visualizations, and complete scRNA-seq workflows. Use when analyzing single-cell genomics data, identifying cell populations, characterizing gene expression patterns, performing pseudotime analysis, comparing conditions or treatments, visualizing cellular heterogeneity, or conducting any single-cell omics analysis requiring scalable Python tools."
description: "Single-cell RNA-seq analysis. Load .h5ad/10X data, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis."
---
# Scanpy: Single-Cell Analysis