skills/claude-scientific-skills
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Add GEO

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Timothy Kassis
2025-10-19 17:14:11 -07:00
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README.md
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@@ -8,6 +8,7 @@ A comprehensive collection of ready-to-use scientific skills for Claude, curated
- **AlphaFold DB** - AI-predicted protein structure database with 200M+ predictions, confidence metrics (pLDDT, PAE), and Google Cloud bulk access
- **ChEMBL** - Bioactive molecule database with drug-like properties (2M+ compounds, 19M+ activities, 13K+ targets)
- **GEO (Gene Expression Omnibus)** - High-throughput gene expression and functional genomics data repository (264K+ studies, 8M+ samples) with microarray, RNA-seq, and expression profile access
- **NCBI Gene** - Work with NCBI Gene database to search, retrieve, and analyze gene information including nomenclature, sequences, variations, phenotypes, and pathways using E-utilities and Datasets API
- **Protein Data Bank (PDB)** - Access 3D structural data of proteins, nucleic acids, and biological macromolecules (200K+ structures) with search, retrieval, and analysis capabilities
- **PubChem** - Access chemical compound data from the world's largest free chemical database (110M+ compounds, 270M+ bioactivities)
@@ -102,7 +103,7 @@ To use any skill from this repository or upload custom skills, follow the instru
### Claude API
You can use Anthropic's pre-built skills, and upload custom skills, via the Claude API. See the [Skills API Quickstart](https://docs.anthropic.com/claude/skills-api-quickstart) for more.
## TODO: Future Scientific Capabilities (Availble currently in K-Dense)
## TODO: Future Scientific Capabilities
### Scientific Databases
- **UniProt** - Protein sequence and functional information database
@@ -110,7 +111,6 @@ You can use Anthropic's pre-built skills, and upload custom skills, via the Clau
- **COSMIC** - Catalogue of Somatic Mutations in Cancer
- **ClinVar** - Clinical significance of genomic variants
- **STRING** - Protein-protein interaction networks
- **GEO (Gene Expression Omnibus)** - Functional genomics data repository
- **European Nucleotide Archive (ENA)** - Comprehensive nucleotide sequence database
### Bioinformatics & Genomics