skills/claude-scientific-skills
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Add support for HistoLab

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Timothy Kassis
2025-10-24 13:41:06 -07:00
parent 7240da6e6c
commit 564bd39835
9 changed files with 2594 additions and 6 deletions
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[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](LICENSE.md)
[![GitHub Stars](https://img.shields.io/github/stars/K-Dense-AI/claude-scientific-skills?style=social)](https://github.com/K-Dense-AI/claude-scientific-skills)
[![Skills](https://img.shields.io/badge/Skills-84-brightgreen.svg)](#what-s-included)
[![Skills](https://img.shields.io/badge/Skills-86-brightgreen.svg)](#what-s-included)
[![Workflows](https://img.shields.io/badge/Workflows-122-orange.svg)](#what-s-included)
A comprehensive collection of ready-to-use scientific skills for Claude, curated by the K-Dense team.
@@ -46,7 +46,7 @@ These skills enable Claude to work with specialized scientific libraries and dat
| Category | Count | Description |
|----------|-------|-------------|
| 📊 **Scientific Databases** | 26 | PubMed, PubChem, UniProt, ChEMBL, COSMIC, DrugBank, AlphaFold DB, bioRxiv, and more |
| 🔬 **Scientific Packages** | 51 | BioPython, RDKit, PyTorch, Scanpy, scvi-tools, ESM, SimPy, pydicom, PyHealth, Data Commons, and more |
| 🔬 **Scientific Packages** | 53 | BioPython, RDKit, PyTorch, Scanpy, scvi-tools, ESM, SimPy, pydicom, PyHealth, Data Commons, histolab, PathML, and more |
| 🔌 **Scientific Integrations** | 6 | Benchling, DNAnexus, Opentrons, LabArchives, LatchBio, OMERO |
| 🛠️ **Scientific Helpers** | 2 | Context initialization and resource detection utilities |
| 📚 **Documented Workflows** | 122 | Ready-to-use examples and reference materials |
@@ -280,7 +280,7 @@ results, conclusions and providing recommendations."
---
### 🔬 Scientific Packages
**49 specialized Python packages** organized by domain.
**50 specialized Python packages** organized by domain.
📖 **[Full Package Documentation →](docs/scientific-packages.md)**
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</details>
<details>
<summary><strong>Additional Packages (6 packages)</strong></summary>
<summary><strong>Additional Packages (8 packages)</strong></summary>
- BIOMNI (Multi-omics), ETE Toolkit (Phylogenetics)
- histolab (Digital pathology WSI processing and tile extraction)
- Paper-2-Web (Academic paper dissemination and presentation)
- PathML (Computational pathology and whole-slide image analysis)
- scikit-bio (Sequence analysis), ToolUniverse (600+ scientific tool ecosystem)
- Zarr (Array storage)