skills/claude-scientific-skills
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Timothy Kassis
2025-11-13 18:57:02 -08:00
parent 8be6c6c307
commit 63f257d81e
1 changed files with 122 additions and 157 deletions
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.claude-plugin/marketplace.json
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{
"name": "claude-scientific-skills",
"owner": {
"name": "Timothy Kassis",
"email": "timothy.kassis@k-dense.ai"
"name": "K-Dense Inc.",
"email": "contact@k-dense.ai"
},
"metadata": {
"description": "Claude scientific skills from K-Dense Inc",
"version": "1.80.0"
"version": "2.0.0"
},
"plugins": [
{
"name": "scientific-packages",
"description": "Collection of python scientific packages",
"name": "scientific-skills",
"description": "Collection of scientific skills",
"source": "./",
"strict": false,
"skills": [
"./scientific-packages/aeon",
"./scientific-packages/anndata",
"./scientific-packages/arboreto",
"./scientific-packages/astropy",
"./scientific-packages/biomni",
"./scientific-packages/biopython",
"./scientific-packages/bioservices",
"./scientific-packages/cellxgene-census",
"./scientific-packages/cobrapy",
"./scientific-packages/dask",
"./scientific-packages/datacommons-client",
"./scientific-packages/denario",
"./scientific-packages/datamol",
"./scientific-packages/deepchem",
"./scientific-packages/deeptools",
"./scientific-packages/diffdock",
"./scientific-packages/esm",
"./scientific-packages/etetoolkit",
"./scientific-packages/flowio",
"./scientific-packages/geniml",
"./scientific-packages/gget",
"./scientific-packages/gtars",
"./scientific-packages/hypogenic",
"./scientific-packages/histolab",
"./scientific-packages/lamindb",
"./scientific-packages/markitdown",
"./scientific-packages/matchms",
"./scientific-packages/matplotlib",
"./scientific-packages/medchem",
"./scientific-packages/modal",
"./scientific-packages/molfeat",
"./scientific-packages/neurokit2",
"./scientific-packages/networkx",
"./scientific-packages/paper-2-web",
"./scientific-packages/pathml",
"./scientific-packages/polars",
"./scientific-packages/pydeseq2",
"./scientific-packages/pydicom",
"./scientific-packages/pyhealth",
"./scientific-packages/pymatgen",
"./scientific-packages/pymc",
"./scientific-packages/pylabrobot",
"./scientific-packages/pymoo",
"./scientific-packages/pufferlib",
"./scientific-packages/pyopenms",
"./scientific-packages/pysam",
"./scientific-packages/pytdc",
"./scientific-packages/pytorch-lightning",
"./scientific-packages/rdkit",
"./scientific-packages/reportlab",
"./scientific-packages/scanpy",
"./scientific-packages/scvi-tools",
"./scientific-packages/scikit-bio",
"./scientific-packages/scikit-learn",
"./scientific-packages/scikit-survival",
"./scientific-packages/seaborn",
"./scientific-packages/shap",
"./scientific-packages/simpy",
"./scientific-packages/stable-baselines3",
"./scientific-packages/statsmodels",
"./scientific-packages/sympy",
"./scientific-packages/torch_geometric",
"./scientific-packages/torchdrug",
"./scientific-packages/tooluniverse",
"./scientific-packages/transformers",
"./scientific-packages/umap-learn",
"./scientific-packages/vaex",
"./scientific-packages/zarr-python"
"./scientific-skills/aeon",
"./scientific-skills/anndata",
"./scientific-skills/arboreto",
"./scientific-skills/astropy",
"./scientific-skills/biomni",
"./scientific-skills/biopython",
"./scientific-skills/bioservices",
"./scientific-skills/cellxgene-census",
"./scientific-skills/cobrapy",
"./scientific-skills/dask",
"./scientific-skills/datacommons-client",
"./scientific-skills/denario",
"./scientific-skills/datamol",
"./scientific-skills/deepchem",
"./scientific-skills/deeptools",
"./scientific-skills/diffdock",
"./scientific-skills/esm",
"./scientific-skills/etetoolkit",
"./scientific-skills/flowio",
"./scientific-skills/geniml",
"./scientific-skills/gget",
"./scientific-skills/gtars",
"./scientific-skills/hypogenic",
"./scientific-skills/histolab",
"./scientific-skills/lamindb",
"./scientific-skills/markitdown",
"./scientific-skills/matchms",
"./scientific-skills/matplotlib",
"./scientific-skills/medchem",
"./scientific-skills/modal",
"./scientific-skills/molfeat",
"./scientific-skills/neurokit2",
"./scientific-skills/networkx",
"./scientific-skills/paper-2-web",
"./scientific-skills/pathml",
"./scientific-skills/polars",
"./scientific-skills/pydeseq2",
"./scientific-skills/pydicom",
"./scientific-skills/pyhealth",
"./scientific-skills/pymatgen",
"./scientific-skills/pymc",
"./scientific-skills/pylabrobot",
"./scientific-skills/pymoo",
"./scientific-skills/pufferlib",
"./scientific-skills/pyopenms",
"./scientific-skills/pysam",
"./scientific-skills/pytdc",
"./scientific-skills/pytorch-lightning",
"./scientific-skills/rdkit",
"./scientific-skills/reportlab",
"./scientific-skills/scanpy",
"./scientific-skills/scvi-tools",
"./scientific-skills/scikit-bio",
"./scientific-skills/scikit-learn",
"./scientific-skills/scikit-survival",
"./scientific-skills/seaborn",
"./scientific-skills/shap",
"./scientific-skills/simpy",
"./scientific-skills/stable-baselines3",
"./scientific-skills/statsmodels",
"./scientific-skills/sympy",
"./scientific-skills/torch_geometric",
"./scientific-skills/torchdrug",
"./scientific-skills/tooluniverse",
"./scientific-skills/transformers",
"./scientific-skills/umap-learn",
"./scientific-skills/vaex",
"./scientific-skills/zarr-python",
"./scientific-skills/alphafold-database",
"./scientific-skills/biorxiv-database",
"./scientific-skills/chembl-database",
"./scientific-skills/clinpgx-database",
"./scientific-skills/clinvar-database",
"./scientific-skills/clinicaltrials-database",
"./scientific-skills/cosmic-database",
"./scientific-skills/drugbank-database",
"./scientific-skills/ena-database",
"./scientific-skills/ensembl-database",
"./scientific-skills/fda-database",
"./scientific-skills/gene-database",
"./scientific-skills/geo-database",
"./scientific-skills/gwas-database",
"./scientific-skills/hmdb-database",
"./scientific-skills/kegg-database",
"./scientific-skills/metabolomics-workbench-database",
"./scientific-skills/opentargets-database",
"./scientific-skills/pdb-database",
"./scientific-skills/pubchem-database",
"./scientific-skills/pubmed-database",
"./scientific-skills/reactome-database",
"./scientific-skills/string-database",
"./scientific-skills/uniprot-database",
"./scientific-skills/uspto-database",
"./scientific-skills/zinc-database",
"./scientific-skills/exploratory-data-analysis",
"./scientific-skills/hypothesis-generation",
"./scientific-skills/literature-review",
"./scientific-skills/peer-review",
"./scientific-skills/scholar-evaluation",
"./scientific-skills/scientific-brainstorming",
"./scientific-skills/scientific-critical-thinking",
"./scientific-skills/scientific-writing",
"./scientific-skills/statistical-analysis",
"./scientific-skills/scientific-visualization",
"./scientific-skills/document-skills/docx",
"./scientific-skills/document-skills/pdf",
"./scientific-skills/document-skills/pptx",
"./scientific-skills/document-skills/xlsx",
"./scientific-skills/benchling-integration",
"./scientific-skills/dnanexus-integration",
"./scientific-skills/labarchive-integration",
"./scientific-skills/latchbio-integration",
"./scientific-skills/omero-integration",
"./scientific-skills/opentrons-integration",
"./scientific-skills/protocolsio-integration",
"./scientific-skills/get-available-resources"
]
},
{
"name": "scientific-databases",
"description": "Collection of scientific databases",
"source": "./",
"strict": false,
"skills": [
"./scientific-databases/alphafold-database",
"./scientific-databases/biorxiv-database",
"./scientific-databases/chembl-database",
"./scientific-databases/clinpgx-database",
"./scientific-databases/clinvar-database",
"./scientific-databases/clinicaltrials-database",
"./scientific-databases/cosmic-database",
"./scientific-databases/drugbank-database",
"./scientific-databases/ena-database",
"./scientific-databases/ensembl-database",
"./scientific-databases/fda-database",
"./scientific-databases/gene-database",
"./scientific-databases/geo-database",
"./scientific-databases/gwas-database",
"./scientific-databases/hmdb-database",
"./scientific-databases/kegg-database",
"./scientific-databases/metabolomics-workbench-database",
"./scientific-databases/opentargets-database",
"./scientific-databases/pdb-database",
"./scientific-databases/pubchem-database",
"./scientific-databases/pubmed-database",
"./scientific-databases/reactome-database",
"./scientific-databases/string-database",
"./scientific-databases/uniprot-database",
"./scientific-databases/uspto-database",
"./scientific-databases/zinc-database"
]
},
{
"name": "scientific-thinking",
"description": "Collection of scientific thinking methodologies",
"source": "./",
"strict": false,
"skills": [
"./scientific-thinking/exploratory-data-analysis",
"./scientific-thinking/hypothesis-generation",
"./scientific-thinking/literature-review",
"./scientific-thinking/peer-review",
"./scientific-thinking/scholar-evaluation",
"./scientific-thinking/scientific-brainstorming",
"./scientific-thinking/scientific-critical-thinking",
"./scientific-thinking/scientific-writing",
"./scientific-thinking/statistical-analysis",
"./scientific-thinking/scientific-visualization",
"./scientific-thinking/document-skills/docx",
"./scientific-thinking/document-skills/pdf",
"./scientific-thinking/document-skills/pptx",
"./scientific-thinking/document-skills/xlsx"
]
},
{
"name": "scientific-integrations",
"description": "Collection of scientific platform integrations",
"source": "./",
"strict": false,
"skills": [
"./scientific-integrations/benchling-integration",
"./scientific-integrations/dnanexus-integration",
"./scientific-integrations/labarchive-integration",
"./scientific-integrations/latchbio-integration",
"./scientific-integrations/omero-integration",
"./scientific-integrations/opentrons-integration",
"./scientific-integrations/protocolsio-integration"
]
},
{
"name": "scientific-context-initialization",
"description": "Always Auto-invoked skill that creates/updates workspace AGENT.md to instruct the agent to always search for existing skills before attempting any scientific task",
"source": "./scientific-helpers/scientific-context-initialization",
"strict": false
},
{
"name": "get-available-resources",
"description": "Detects and reports available system resources (CPU cores, GPUs, memory, disk space) to inform computational approach decisions",
"source": "./scientific-helpers/get-available-resources",
"strict": false
}
]
}