skills/claude-scientific-skills
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Add support for OpenAlex

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Timothy Kassis
2025-11-19 13:38:32 -08:00
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# Claude Scientific Skills
[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](LICENSE.md)
[![Skills](https://img.shields.io/badge/Skills-119-brightgreen.svg)](#whats-included)
[![Skills](https://img.shields.io/badge/Skills-120-brightgreen.svg)](#whats-included)
A comprehensive collection of **119+ ready-to-use scientific skills** for Claude, created by the K-Dense team. Transform Claude into your AI research assistant capable of executing complex multi-step scientific workflows across biology, chemistry, medicine, and beyond.
A comprehensive collection of **120+ ready-to-use scientific skills** for Claude, created by the K-Dense team. Transform Claude into your AI research assistant capable of executing complex multi-step scientific workflows across biology, chemistry, medicine, and beyond.
These skills enable Claude to seamlessly work with specialized scientific libraries, databases, and tools across multiple scientific domains:
- 🧬 Bioinformatics & Genomics - Sequence analysis, single-cell RNA-seq, gene regulatory networks, variant annotation, phylogenetic analysis
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## 📦 What's Included
This repository provides **119+ scientific skills** organized into the following categories:
This repository provides **120+ scientific skills** organized into the following categories:
- **25+ Scientific Databases** - Direct API access to PubMed, ChEMBL, UniProt, COSMIC, ClinicalTrials.gov, and more
- **26+ Scientific Databases** - Direct API access to OpenAlex, PubMed, ChEMBL, UniProt, COSMIC, ClinicalTrials.gov, and more
- **50+ Python Packages** - RDKit, Scanpy, PyTorch Lightning, scikit-learn, BioPython, and others
- **15+ Scientific Integrations** - Benchling, DNAnexus, LatchBio, OMERO, Protocols.io, and more
- **20+ Analysis & Communication Tools** - Literature review, scientific writing, peer review, document processing
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- **Multi-Step Workflows** - Execute complex pipelines with a single prompt
### 🎯 **Comprehensive Coverage**
- **119+ Skills** - Extensive coverage across all major scientific domains
- **25+ Databases** - Direct access to PubMed, ChEMBL, UniProt, COSMIC, and more
- **120+ Skills** - Extensive coverage across all major scientific domains
- **26+ Databases** - Direct access to OpenAlex, PubMed, ChEMBL, UniProt, COSMIC, and more
- **50+ Python Packages** - RDKit, Scanpy, PyTorch Lightning, scikit-learn, and others
### 🔧 **Easy Integration**
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## 📚 Available Skills
This repository contains **119+ scientific skills** organized across multiple domains. Each skill provides comprehensive documentation, code examples, and best practices for working with scientific libraries, databases, and tools.
This repository contains **120+ scientific skills** organized across multiple domains. Each skill provides comprehensive documentation, code examples, and best practices for working with scientific libraries, databases, and tools.
### Skill Categories
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#### 🧬 **Protein Engineering & Design** (1 skill)
- Protein language models: ESM
#### 📚 **Scientific Communication** (8+ skills)
- Literature: PubMed, Literature Review
#### 📚 **Scientific Communication** (9+ skills)
- Literature: OpenAlex, PubMed, Literature Review
- Web search: Perplexity Search (AI-powered search with real-time information)
- Writing: Scientific Writing, Peer Review
- Document processing: DOCX, PDF, PPTX, XLSX, MarkItDown
- Publishing: Paper-2-Web
#### 🔬 **Scientific Databases** (25+ skills)
#### 🔬 **Scientific Databases** (26+ skills)
- Protein: UniProt, PDB, AlphaFold DB
- Chemical: PubChem, ChEMBL, DrugBank, ZINC, HMDB
- Genomic: Ensembl, NCBI Gene, GEO, ENA, GWAS Catalog