skills/claude-scientific-skills
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Add support for GeoPandas

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Timothy Kassis
2025-11-27 18:57:26 -05:00
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# Claude Scientific Skills
[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](LICENSE.md)
[![Skills](https://img.shields.io/badge/Skills-122-brightgreen.svg)](#whats-included)
[![Skills](https://img.shields.io/badge/Skills-123-brightgreen.svg)](#whats-included)
A comprehensive collection of **122+ ready-to-use scientific skills** for Claude, created by the K-Dense team. Transform Claude into your AI research assistant capable of executing complex multi-step scientific workflows across biology, chemistry, medicine, and beyond.
A comprehensive collection of **123+ ready-to-use scientific skills** for Claude, created by the K-Dense team. Transform Claude into your AI research assistant capable of executing complex multi-step scientific workflows across biology, chemistry, medicine, and beyond.
These skills enable Claude to seamlessly work with specialized scientific libraries, databases, and tools across multiple scientific domains:
- 🧬 Bioinformatics & Genomics - Sequence analysis, single-cell RNA-seq, gene regulatory networks, variant annotation, phylogenetic analysis
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## 📦 What's Included
This repository provides **122+ scientific skills** organized into the following categories:
This repository provides **123+ scientific skills** organized into the following categories:
- **26+ Scientific Databases** - Direct API access to OpenAlex, PubMed, ChEMBL, UniProt, COSMIC, ClinicalTrials.gov, and more
- **51+ Python Packages** - RDKit, Scanpy, PyTorch Lightning, scikit-learn, BioPython, and others
- **52+ Python Packages** - RDKit, Scanpy, PyTorch Lightning, scikit-learn, BioPython, GeoPandas, and others
- **15+ Scientific Integrations** - Benchling, DNAnexus, LatchBio, OMERO, Protocols.io, and more
- **20+ Analysis & Communication Tools** - Literature review, scientific writing, peer review, document processing
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- **Multi-Step Workflows** - Execute complex pipelines with a single prompt
### 🎯 **Comprehensive Coverage**
- **122+ Skills** - Extensive coverage across all major scientific domains
- **123+ Skills** - Extensive coverage across all major scientific domains
- **26+ Databases** - Direct access to OpenAlex, PubMed, ChEMBL, UniProt, COSMIC, and more
- **51+ Python Packages** - RDKit, Scanpy, PyTorch Lightning, scikit-learn, and others
- **52+ Python Packages** - RDKit, Scanpy, PyTorch Lightning, scikit-learn, GeoPandas, and others
### 🔧 **Easy Integration**
- **One-Click Setup** - Install via Claude Code or MCP server
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## 📚 Available Skills
This repository contains **120+ scientific skills** organized across multiple domains. Each skill provides comprehensive documentation, code examples, and best practices for working with scientific libraries, databases, and tools.
This repository contains **121+ scientific skills** organized across multiple domains. Each skill provides comprehensive documentation, code examples, and best practices for working with scientific libraries, databases, and tools.
### Skill Categories
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- Discrete-event simulation: SimPy
- Data processing: Dask, Polars, Vaex
#### 📊 **Data Analysis & Visualization** (9+ skills)
#### 📊 **Data Analysis & Visualization** (10+ skills)
- Visualization: Matplotlib, Seaborn, Plotly
- Geospatial analysis: GeoPandas
- Network analysis: NetworkX
- Symbolic math: SymPy
- PDF generation: ReportLab