Add planning with files skill from @OthmanAdi

scientific-skills/planning-with-files/scripts/check-complete.sh

@@ -0,0 +1,46 @@
+#!/bin/bash
+# Check if all phases in task_plan.md are complete
+# Always exits 0 — uses stdout for status reporting
+# Used by Stop hook to report task completion status
+
+PLAN_FILE="${1:-task_plan.md}"
+
+if [ ! -f "$PLAN_FILE" ]; then
+    echo "[planning-with-files] No task_plan.md found — no active planning session."
+    exit 0
+fi
+
+# Count total phases
+TOTAL=$(grep -c "### Phase" "$PLAN_FILE" || true)
+
+# Check for **Status:** format first
+COMPLETE=$(grep -cF "**Status:** complete" "$PLAN_FILE" || true)
+IN_PROGRESS=$(grep -cF "**Status:** in_progress" "$PLAN_FILE" || true)
+PENDING=$(grep -cF "**Status:** pending" "$PLAN_FILE" || true)
+
+# Fallback: check for [complete] inline format if **Status:** not found
+if [ "$COMPLETE" -eq 0 ] && [ "$IN_PROGRESS" -eq 0 ] && [ "$PENDING" -eq 0 ]; then
+    COMPLETE=$(grep -c "\[complete\]" "$PLAN_FILE" || true)
+    IN_PROGRESS=$(grep -c "\[in_progress\]" "$PLAN_FILE" || true)
+    PENDING=$(grep -c "\[pending\]" "$PLAN_FILE" || true)
+fi
+
+# Default to 0 if empty
+: "${TOTAL:=0}"
+: "${COMPLETE:=0}"
+: "${IN_PROGRESS:=0}"
+: "${PENDING:=0}"
+
+# Report status (always exit 0 — incomplete task is a normal state)
+if [ "$COMPLETE" -eq "$TOTAL" ] && [ "$TOTAL" -gt 0 ]; then
+    echo "[planning-with-files] ALL PHASES COMPLETE ($COMPLETE/$TOTAL). If the user has additional work, add new phases to task_plan.md before starting."
+else
+    echo "[planning-with-files] Task in progress ($COMPLETE/$TOTAL phases complete). Update progress.md before stopping."
+    if [ "$IN_PROGRESS" -gt 0 ]; then
+        echo "[planning-with-files] $IN_PROGRESS phase(s) still in progress."
+    fi
+    if [ "$PENDING" -gt 0 ]; then
+        echo "[planning-with-files] $PENDING phase(s) pending."
+    fi
+fi
+exit 0