skills/claude-scientific-skills
1
0
Fork 0
mirror of https://github.com/K-Dense-AI/claude-scientific-skills.git synced 2026-01-26 16:58:56 +08:00
Code Issues Packages Projects Releases Wiki Activity

Improved Biomni support

Browse Source
This commit is contained in:
Timothy Kassis
2025-10-22 08:38:06 -07:00
parent 71a3c3750f
commit 77822efeed
9 changed files with 2512 additions and 3393 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
docs/scientific-packages.md
View File

@@ -56,7 +56,7 @@
- **scikit-bio** - Bioinformatics sequence analysis and diversity metrics
- **Zarr** - Chunked, compressed N-dimensional array storage
## Multi-omics & Integration
- **BIOMNI** - Multi-omics data integration with LLM-powered analysis
## Multi-omics & AI Agent Frameworks
- **BIOMNI** - Autonomous biomedical AI agent framework from Stanford SNAP lab for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Combines LLM reasoning with code execution and ~11GB of integrated biomedical databases (Ensembl, NCBI Gene, UniProt, PDB, AlphaFold, ClinVar, OMIM, HPO, PubMed, KEGG, Reactome, GO). Supports multiple LLM providers (Claude, GPT-4, Gemini, Groq, Bedrock). Includes A1 agent class for autonomous task decomposition, BiomniEval1 benchmark framework, and MCP server integration. Use cases: CRISPR screening design, single-cell RNA-seq analysis, ADMET prediction, GWAS interpretation, rare disease diagnosis, protein structure analysis, literature synthesis, and multi-omics integration