diff --git a/docs/project/issues/issue-00000001-markdown-mermaid-skill.md b/docs/project/issues/issue-00000001-markdown-mermaid-skill.md index e2192e2..ebce40d 100644 --- a/docs/project/issues/issue-00000001-markdown-mermaid-skill.md +++ b/docs/project/issues/issue-00000001-markdown-mermaid-skill.md @@ -63,9 +63,9 @@ flowchart LR accTitle: Documentation Production Workflow accDescr: Mermaid in markdown is the required source phase. Python and AI-generated images are optional downstream phases for polished output only. - source["๐Ÿ“„ Phase 1 โ€” Mermaid in Markdown\n(ALWAYS โ€” source of truth)"] - python["๐Ÿ Phase 2 โ€” Python Generated\n(optional โ€” when charts needed)"] - ai["๐ŸŽจ Phase 3 โ€” AI Generated\n(optional โ€” polished visuals)"] + source["๐Ÿ“„ Phase 1 โ€” Mermaid in Markdown
(ALWAYS โ€” source of truth)"] + python["๐Ÿ Phase 2 โ€” Python Generated
(optional โ€” when charts needed)"] + ai["๐ŸŽจ Phase 3 โ€” AI Generated
(optional โ€” polished visuals)"] final["๐Ÿ“Š Final Output"] source --> python diff --git a/docs/project/pr/pr-00000001-markdown-mermaid-skill.md b/docs/project/pr/pr-00000001-markdown-mermaid-skill.md index 1f49b15..24667f2 100644 --- a/docs/project/pr/pr-00000001-markdown-mermaid-skill.md +++ b/docs/project/pr/pr-00000001-markdown-mermaid-skill.md @@ -84,7 +84,7 @@ flowchart TD accTitle: New Skill Position in Ecosystem accDescr: Shows markdown-mermaid-writing as the foundation layer that other skills build upon for documentation output - new["๐Ÿ“„ markdown-mermaid-writing\n(this PR โ€” new skill)"] + new["๐Ÿ“„ markdown-mermaid-writing
(this PR โ€” new skill)"] writing["โœ๏ธ scientific-writing"] lit["๐Ÿ“š literature-review"] schematics["๐ŸŽจ scientific-schematics"] diff --git a/scientific-skills/markdown-mermaid-writing/SKILL.md b/scientific-skills/markdown-mermaid-writing/SKILL.md index 1d17db5..1d440c4 100644 --- a/scientific-skills/markdown-mermaid-writing/SKILL.md +++ b/scientific-skills/markdown-mermaid-writing/SKILL.md @@ -80,9 +80,9 @@ flowchart LR accTitle: Three-Phase Documentation Workflow accDescr: Phase 1 Mermaid in markdown is always required and is the source of truth. Phases 2 and 3 are optional downstream conversions for polished output. - p1["๐Ÿ“„ Phase 1\nMermaid in Markdown\n(ALWAYS โ€” source of truth)"] - p2["๐Ÿ Phase 2\nPython Generated\n(optional โ€” data charts)"] - p3["๐ŸŽจ Phase 3\nAI Generated Visuals\n(optional โ€” polish)"] + p1["๐Ÿ“„ Phase 1
Mermaid in Markdown
(ALWAYS โ€” source of truth)"] + p2["๐Ÿ Phase 2
Python Generated
(optional โ€” data charts)"] + p3["๐ŸŽจ Phase 3
AI Generated Visuals
(optional โ€” polish)"] out["๐Ÿ“Š Final Deliverable"] p1 --> out diff --git a/scientific-skills/markdown-mermaid-writing/assets/examples/example-research-report.md b/scientific-skills/markdown-mermaid-writing/assets/examples/example-research-report.md index e470e73..7925d20 100644 --- a/scientific-skills/markdown-mermaid-writing/assets/examples/example-research-report.md +++ b/scientific-skills/markdown-mermaid-writing/assets/examples/example-research-report.md @@ -25,11 +25,11 @@ flowchart TD accTitle: CRISPR Editing Experimental Workflow accDescr: Five-stage experimental pipeline from gRNA design through data analysis, with quality checkpoints between each stage. - design["๐Ÿงฌ Stage 1\ngRNA Design\n(CRISPRscan + Cas-OFFinder)"] - synth["โš™๏ธ Stage 2\nOligo Synthesis\n& Annealing"] - transfect["๐Ÿ”ฌ Stage 3\nCell Transfection\n(Lipofectamine 3000)"] - screen["๐Ÿงช Stage 4\nPrimary Screen\n(T7E1 assay)"] - ngs["๐Ÿ“Š Stage 5\nNGS Validation\n(150 bp PE reads)"] + design["๐Ÿงฌ Stage 1
gRNA Design
(CRISPRscan + Cas-OFFinder)"] + synth["โš™๏ธ Stage 2
Oligo Synthesis
& Annealing"] + transfect["๐Ÿ”ฌ Stage 3
Cell Transfection
(Lipofectamine 3000)"] + screen["๐Ÿงช Stage 4
Primary Screen
(T7E1 assay)"] + ngs["๐Ÿ“Š Stage 5
NGS Validation
(150 bp PE reads)"] qc1{GC 40-65%?} qc2{Yield โ‰ฅ 2 ยตg?}