skills/claude-scientific-skills
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Add matchms

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Timothy Kassis
2025-10-20 18:10:20 -07:00
parent ee66557f21
commit 86243b1c45
7 changed files with 1931 additions and 2 deletions
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@@ -67,6 +67,7 @@ After installing the plugin, you can use the skill by just mentioning it. Additi
- **RDKit** - Cheminformatics toolkit for molecular I/O, descriptors, fingerprints, and SMARTS
**Proteomics & Mass Spectrometry:**
- **matchms** - Processing and similarity matching of mass spectrometry data with 40+ filters, spectral library matching (Cosine, Modified Cosine, Neutral Losses), metadata harmonization, molecular fingerprint comparison, and support for multiple file formats (MGF, MSP, mzML, JSON)
- **pyOpenMS** - Comprehensive mass spectrometry data analysis for proteomics and metabolomics (LC-MS/MS processing, peptide identification, feature detection, quantification, chemical calculations, and integration with search engines like Comet, Mascot, MSGF+)
**Machine Learning & Deep Learning:**
@@ -161,7 +162,6 @@ After installing the plugin, you can use the skill by just mentioning it. Additi
### Proteomics & Mass Spectrometry
- **pyteomics** - Mass spectrometry data analysis
- **matchms** - Processing and similarity matching of mass spectrometry data
- **MSstats** - Statistical analysis of quantitative proteomics
### Systems Biology & Networks