skills/claude-scientific-skills
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Add support for bioRxiv database search and paper downloading

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Timothy Kassis
2025-10-23 08:51:45 -07:00
parent 0943c243bb
commit 87a608730c
6 changed files with 1211 additions and 5 deletions
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README.md
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[![License: PolyForm Noncommercial 1.0.0](https://img.shields.io/badge/License-PolyForm%20Noncommercial-blue.svg)](LICENSE.md)
[![GitHub Stars](https://img.shields.io/github/stars/K-Dense-AI/claude-scientific-skills?style=social)](https://github.com/K-Dense-AI/claude-scientific-skills)
[![Skills](https://img.shields.io/badge/Skills-73%2B-brightgreen.svg)](#what-s-included)
[![Skills](https://img.shields.io/badge/Skills-74%2B-brightgreen.svg)](#what-s-included)
[![Workflows](https://img.shields.io/badge/Workflows-122-orange.svg)](#what-s-included)
A comprehensive collection of ready-to-use scientific skills for Claude, curated by the K-Dense team.
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| Category | Count | Description |
|----------|-------|-------------|
| 📊 **Scientific Databases** | 24 | PubMed, PubChem, UniProt, ChEMBL, COSMIC, AlphaFold DB, and more |
| 📊 **Scientific Databases** | 25 | PubMed, PubChem, UniProt, ChEMBL, COSMIC, AlphaFold DB, bioRxiv, and more |
| 🔬 **Scientific Packages** | 43 | BioPython, RDKit, PyTorch, Scanpy, and specialized tools |
| 🔌 **Scientific Integrations** | 6 | Benchling, DNAnexus, Opentrons, LabArchives, LatchBio, OMERO |
| 🎯 **Context Initialization** | 1 | Auto-invoked skill to ensure Claude uses existing skills effectively |
@@ -77,7 +77,7 @@ Then, to install a specific set of skills:
1. Select **Browse and install plugins**
2. Select **claude-scientific-skills**
3. Choose from:
- `scientific-databases` - Access to 24 scientific databases
- `scientific-databases` - Access to 25 scientific databases
- `scientific-packages` - 43 specialized Python packages
- `scientific-thinking` - Analysis tools and document processing
- `scientific-integrations` - Lab automation and platform integrations
@@ -210,7 +210,7 @@ network visualizations. Finally, search GEO for similar expression patterns acro
## 📚 Available Skills
### 🗄️ Scientific Databases
**24 comprehensive databases** including PubMed, PubChem, UniProt, ChEMBL, AlphaFold DB, COSMIC, Ensembl, KEGG, and more.
**25 comprehensive databases** including PubMed, PubChem, UniProt, ChEMBL, AlphaFold DB, bioRxiv, COSMIC, Ensembl, KEGG, and more.
📖 **[Full Database Documentation →](docs/scientific-databases.md)**
@@ -218,6 +218,7 @@ network visualizations. Finally, search GEO for similar expression patterns acro
<summary><strong>View all databases</strong></summary>
- **AlphaFold DB** - AI-predicted protein structures (200M+ predictions)
- **bioRxiv** - Life sciences preprint server with medRxiv integration
- **ChEMBL** - Bioactive molecules and drug-like properties
- **ClinPGx** - Clinical pharmacogenomics and gene-drug interactions
- **ClinVar** - Genomic variants and clinical significance