Added all updated deep research and writing skills

2026-03-29 07:43:46 +08:00 · 2025-12-11 18:37:06 -08:00
parent 78331e1b37
commit ae60fcf620
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--- a/scientific-skills/pptx-posters/assets/poster_html_template.html
+++ b/scientific-skills/pptx-posters/assets/poster_html_template.html
@@ -0,0 +1,257 @@
+<!DOCTYPE html>
+<html>
+<head>
+<meta charset="UTF-8">
+<title>Research Poster Template - 36x48 inches</title>
+<style>
+/* PPTX POSTER TEMPLATE
+   Generate images FIRST:
+   - Hero: python scripts/generate_image.py "scientific banner" -o figures/hero.png
+   - Workflow: python scripts/generate_schematic.py "workflow diagram" -o figures/workflow.png
+   - Results: python scripts/generate_image.py "data visualization" -o figures/results.png
+*/
+
+html { background: #f0f4f8; }
+
+body {
+  width: 2592pt;
+  height: 3456pt;
+  margin: 0;
+  padding: 0;
+  font-family: Arial, Helvetica, sans-serif;
+  display: flex;
+  flex-direction: column;
+  background-color: #f7fafc;
+}
+
+.header {
+  height: 420pt;
+  background: linear-gradient(135deg, #1a365d 0%, #2b6cb0 50%, #3182ce 100%);
+  display: flex;
+  align-items: center;
+  padding: 50pt 80pt;
+  gap: 60pt;
+}
+
+.header-text { flex: 1; }
+
+.poster-title {
+  color: #ffffff;
+  font-size: 108pt;
+  font-weight: bold;
+  line-height: 1.1;
+  margin: 0 0 35pt 0;
+}
+
+.authors {
+  color: #e2e8f0;
+  font-size: 48pt;
+  margin: 0 0 20pt 0;
+}
+
+.affiliations {
+  color: #a0aec0;
+  font-size: 38pt;
+  margin: 0;
+}
+
+.hero-image {
+  width: 650pt;
+  height: 380pt;
+  border-radius: 24pt;
+  object-fit: cover;
+  box-shadow: 0 8pt 40pt rgba(0,0,0,0.3);
+}
+
+.main-content {
+  flex: 1;
+  display: flex;
+  gap: 50pt;
+  padding: 60pt 80pt;
+}
+
+.column {
+  flex: 1;
+  display: flex;
+  flex-direction: column;
+  gap: 50pt;
+}
+
+.block {
+  background: #ffffff;
+  border-radius: 24pt;
+  padding: 45pt;
+  box-shadow: 0 4pt 24pt rgba(0,0,0,0.08);
+  border-left: 8pt solid #3182ce;
+}
+
+.block-title {
+  font-size: 52pt;
+  font-weight: bold;
+  color: #1a365d;
+  margin: 0 0 30pt 0;
+  padding-bottom: 20pt;
+  border-bottom: 3pt solid #e2e8f0;
+}
+
+.block-content {
+  font-size: 34pt;
+  line-height: 1.5;
+  color: #2d3748;
+}
+
+.block-image {
+  width: 100%;
+  border-radius: 16pt;
+  margin: 25pt 0;
+}
+
+ul {
+  margin: 20pt 0;
+  padding-left: 60pt;
+}
+
+li {
+  font-size: 34pt;
+  line-height: 1.6;
+  color: #2d3748;
+  margin-bottom: 18pt;
+}
+
+.key-finding {
+  background: linear-gradient(135deg, #ebf8ff 0%, #bee3f8 100%);
+  border-radius: 16pt;
+  padding: 30pt;
+  margin: 25pt 0;
+  border-left: 6pt solid #3182ce;
+}
+
+.key-finding p {
+  font-size: 36pt;
+  font-weight: 600;
+  color: #2b6cb0;
+  margin: 0;
+}
+
+.placeholder {
+  background: #edf2f7;
+  border-radius: 16pt;
+  border: 3pt dashed #a0aec0;
+}
+
+.footer {
+  height: 220pt;
+  background: linear-gradient(135deg, #1a365d 0%, #2d3748 100%);
+  display: flex;
+  align-items: center;
+  padding: 0 80pt;
+  gap: 60pt;
+}
+
+.references {
+  flex: 2;
+  color: #e2e8f0;
+  font-size: 24pt;
+}
+
+.contact {
+  flex: 1;
+  text-align: right;
+  color: #ffffff;
+  font-size: 28pt;
+}
+</style>
+</head>
+<body>
+
+<div class="header">
+  <div class="header-text">
+    <h1 class="poster-title">Your Research Title Here</h1>
+    <p class="authors">Author One¹*, Author Two², Author Three¹</p>
+    <p class="affiliations">¹University of Example · ²Research Institute</p>
+  </div>
+  <img src="figures/hero.png" class="hero-image">
+</div>
+
+<div class="main-content">
+  <div class="column">
+    <div class="block">
+      <h2 class="block-title">Introduction</h2>
+      <div class="block-content">
+        <img src="figures/intro.png" class="block-image">
+        <p><b>Background:</b> Context about your research problem.</p>
+        <p><b>Objective:</b> What you aimed to accomplish.</p>
+      </div>
+    </div>
+    <div class="block" style="border-left-color: #38a169;">
+      <h2 class="block-title">Methods</h2>
+      <div class="block-content">
+        <img src="figures/workflow.png" class="block-image">
+        <ul>
+          <li>Study design overview</li>
+          <li>Key methodology</li>
+          <li>Analysis approach</li>
+        </ul>
+      </div>
+    </div>
+  </div>
+  
+  <div class="column">
+    <div class="block" style="flex: 1; border-left-color: #ed8936;">
+      <h2 class="block-title">Results</h2>
+      <div class="block-content">
+        <div class="key-finding">
+          <p>Key Finding: Your main result in one sentence</p>
+        </div>
+        <div id="chart1" class="placeholder" style="width: 100%; height: 400pt;"></div>
+        <img src="figures/results.png" class="block-image">
+        <ul>
+          <li><b>Finding 1:</b> Description (p &lt; 0.001)</li>
+          <li><b>Finding 2:</b> Description with effect size</li>
+        </ul>
+      </div>
+    </div>
+  </div>
+  
+  <div class="column">
+    <div class="block">
+      <h2 class="block-title">Discussion</h2>
+      <div class="block-content">
+        <ul>
+          <li>Interpretation of findings</li>
+          <li>Comparison to prior work</li>
+          <li>Practical applications</li>
+        </ul>
+      </div>
+    </div>
+    <div class="block" style="border-left-color: #805ad5;">
+      <h2 class="block-title">Conclusions</h2>
+      <div class="block-content">
+        <ul>
+          <li><b>Conclusion 1:</b> Clear takeaway</li>
+          <li><b>Conclusion 2:</b> Clear takeaway</li>
+          <li><b>Future:</b> Next steps</li>
+        </ul>
+      </div>
+    </div>
+    <div class="block" style="border-left-color: #718096;">
+      <h2 class="block-title" style="font-size: 42pt;">Acknowledgments</h2>
+      <div class="block-content" style="font-size: 28pt;">
+        <p>Funded by Grant #XXX. Thanks to collaborators.</p>
+      </div>
+    </div>
+  </div>
+</div>
+
+<div class="footer">
+  <div class="references">
+    <p><b>References:</b> 1. Author (2024) Journal. 2. Author (2023) Journal.</p>
+  </div>
+  <div class="contact">
+    <p>Contact: author@university.edu</p>
+    <p>Lab: labwebsite.edu</p>
+  </div>
+</div>
+
+</body>
+</html>
--- a/scientific-skills/pptx-posters/assets/poster_quality_checklist.md
+++ b/scientific-skills/pptx-posters/assets/poster_quality_checklist.md
@@ -0,0 +1,358 @@
+# Research Poster Quality Checklist
+
+Use this comprehensive checklist before printing or presenting your research poster.
+
+## Pre-Compilation Checks
+
+### Content Completeness
+- [ ] Title is concise and descriptive (10-15 words)
+- [ ] All author names spelled correctly
+- [ ] Affiliations complete and accurate
+- [ ] Contact email address included
+- [ ] All sections present: Introduction, Methods, Results, Conclusions
+- [ ] References cited (5-10 key citations)
+- [ ] Acknowledgments included (funding, collaborators)
+- [ ] No placeholder text remaining (TODO, Lorem ipsum, etc.)
+
+### Visual Content
+- [ ] All figures prepared and high resolution (300+ DPI)
+- [ ] Figure captions written and descriptive
+- [ ] Logos available (university, funding agencies)
+- [ ] QR codes generated and tested
+- [ ] Icons/graphics sourced (if used)
+
+### LaTeX Configuration
+- [ ] Correct paper size specified (A0, A1, 36×48", etc.)
+- [ ] Correct orientation (portrait/landscape)
+- [ ] Minimal margins configured (5-15mm)
+- [ ] Font sizes appropriate (title 72pt+, body 24pt+)
+- [ ] Color scheme defined
+- [ ] All packages installed and working
+
+## Compilation Checks
+
+### Successful Compilation
+- [ ] PDF compiles without errors
+- [ ] No critical warnings in .log file
+- [ ] All citations resolved (no [?] marks)
+- [ ] All cross-references working
+- [ ] Bibliography generated correctly (if using BibTeX)
+
+### Warning Review
+Run in terminal: `grep -i "warning\|overfull\|underfull" poster.log`
+
+- [ ] No overfull hbox warnings (text too wide)
+- [ ] No underfull hbox warnings (excessive spacing)
+- [ ] No missing figure warnings
+- [ ] No missing font warnings
+- [ ] No undefined reference warnings
+
+## PDF Quality Checks
+
+### Automated Checks
+
+Run: `./scripts/review_poster.sh poster.pdf` or manually verify:
+
+#### Page Specifications
+```bash
+pdfinfo poster.pdf | grep "Page size"
+```
+- [ ] Page size matches requirements exactly
+- [ ] Single page document (not multi-page)
+- [ ] Correct orientation
+
+#### Font Embedding
+```bash
+pdffonts poster.pdf
+```
+- [ ] All fonts show "yes" in "emb" column
+- [ ] No bitmap fonts (should be Type 1 or TrueType)
+
+#### Image Quality
+```bash
+pdfimages -list poster.pdf
+```
+- [ ] All images at least 300 DPI
+- [ ] No JPEG artifacts in figures
+- [ ] Vector graphics used where possible
+
+#### File Size
+```bash
+ls -lh poster.pdf
+```
+- [ ] Reasonable size (2-50 MB typical)
+- [ ] Not too large for email (<50 MB) if sharing digitally
+- [ ] Not suspiciously small (<1 MB - may indicate low quality)
+
+## Visual Inspection (100% Zoom)
+
+### Layout and Spacing
+- [ ] Content fills entire page (no excessive white margins)
+- [ ] Consistent spacing between columns (1-2cm)
+- [ ] Consistent spacing between blocks (1-2cm)
+- [ ] All elements aligned to grid
+- [ ] No overlapping text or figures
+- [ ] White space evenly distributed (30-40% total)
+- [ ] Visual balance across poster (no heavy/empty areas)
+
+### Typography
+- [ ] Title readable and prominent (72-120pt)
+- [ ] Section headers clear (48-72pt)
+- [ ] Body text large enough (24-36pt minimum, 30pt+ recommended)
+- [ ] Captions readable (18-24pt)
+- [ ] No text running off edges
+- [ ] Consistent font usage throughout
+- [ ] Line spacing adequate (1.2-1.5×)
+- [ ] No awkward hyphenation or word breaks
+- [ ] All special characters render correctly (Greek, math symbols)
+
+### Visual Elements
+- [ ] All figures display correctly
+- [ ] No pixelated or blurry images
+- [ ] Figure resolution high (zoom to 200% to verify)
+- [ ] Figure labels large and clear
+- [ ] Graph axes labeled with units
+- [ ] Color schemes consistent across figures
+- [ ] Legends readable and well-positioned
+- [ ] Logos crisp and professional
+- [ ] QR codes sharp and high-contrast (minimum 2×2cm)
+- [ ] No visual artifacts or rendering errors
+
+### Colors
+- [ ] Colors render as intended (not washed out)
+- [ ] High contrast between text and background (≥4.5:1)
+- [ ] Color scheme harmonious
+- [ ] Colors appropriate for printing (not too bright/neon)
+- [ ] Institutional colors used correctly
+- [ ] Color-blind friendly palette (avoid red-green only)
+
+### Content
+- [ ] Title complete and correctly positioned
+- [ ] All author names and affiliations visible
+- [ ] All sections present and labeled
+- [ ] Results section has figures/data
+- [ ] Conclusions clearly stated
+- [ ] References formatted consistently
+- [ ] Contact information clearly visible
+- [ ] No missing content
+
+## Reduced-Scale Print Test (CRITICAL)
+
+### Test Print Preparation
+Print poster at 25% scale:
+- A0 poster → Print on A4 paper
+- 36×48" poster → Print on Letter paper
+- A1 poster → Print on A5 paper
+
+### Readability from Distance
+
+**From 6 feet (2 meters):**
+- [ ] Title clearly readable
+- [ ] Authors identifiable
+- [ ] Main figures visible
+
+**From 4 feet (1.2 meters):**
+- [ ] Section headers readable
+- [ ] Figure captions readable
+- [ ] Key results visible
+
+**From 2 feet (0.6 meters):**
+- [ ] Body text readable
+- [ ] References readable
+- [ ] All details clear
+
+### Print Quality
+- [ ] Colors accurate (match screen expectations)
+- [ ] No banding or color shifts
+- [ ] Sharp edges (not blurry)
+- [ ] Consistent print density
+- [ ] No printer artifacts
+
+## Content Proofreading
+
+### Text Accuracy
+- [ ] Spell-checked all text
+- [ ] Grammar checked
+- [ ] All author names spelled correctly
+- [ ] All affiliations accurate
+- [ ] Email address correct
+- [ ] No typos in title or headers
+
+### Scientific Accuracy
+- [ ] All numbers and statistics verified
+- [ ] Units included and correct
+- [ ] Statistical significance correctly indicated
+- [ ] Sample sizes (n=) reported
+- [ ] Figure numbering consistent
+- [ ] Citations accurate and complete
+- [ ] Methodology accurately described
+- [ ] Results match figures/data
+- [ ] Conclusions supported by data
+
+### Consistency
+- [ ] Terminology consistent throughout
+- [ ] Abbreviations defined at first use
+- [ ] Consistent notation (italics for genes, etc.)
+- [ ] Consistent units (don't mix metric/imperial)
+- [ ] Consistent decimal places
+- [ ] Consistent citation format
+
+## Accessibility Checks
+
+### Color Contrast
+Test at: https://webaim.org/resources/contrastchecker/
+
+- [ ] Title-background contrast ≥ 7:1
+- [ ] Body text-background contrast ≥ 4.5:1
+- [ ] All text meets WCAG AA standard minimum
+
+### Color Blindness
+Test with simulator: https://www.color-blindness.com/coblis-color-blindness-simulator/
+
+- [ ] Information not lost with deuteranopia (red-green)
+- [ ] Key distinctions visible with protanopia
+- [ ] Patterns/shapes used in addition to color
+- [ ] No critical info conveyed by color alone
+
+### Visual Clarity
+- [ ] Clear visual hierarchy (size, weight, position)
+- [ ] Logical reading order
+- [ ] Grouping of related elements obvious
+- [ ] Important info emphasized appropriately
+
+## Peer Review
+
+### 30-Second Test
+Show poster to colleague for 30 seconds, then ask:
+- [ ] They can identify the research topic
+- [ ] They can state the main finding
+- [ ] They remember the key figure
+
+### 5-Minute Review
+Ask colleague to read poster (5 minutes), then ask:
+- [ ] They understand the research question
+- [ ] They can explain the approach
+- [ ] They can summarize the conclusions
+- [ ] They identify what makes it novel/important
+
+### Feedback
+- [ ] Noted any confusing elements
+- [ ] Identified any unclear figures
+- [ ] Checked for jargon that needs definition
+- [ ] Verified logical flow
+
+## Pre-Printing Final Checks
+
+### Technical Specifications
+- [ ] PDF size exactly matches conference requirements
+- [ ] Orientation correct (portrait vs landscape)
+- [ ] All fonts embedded (verified with pdffonts)
+- [ ] Color space correct (RGB for screen, CMYK if printer requires)
+- [ ] Resolution adequate (300+ DPI for all images)
+- [ ] Bleed area added if required (typically 3-5mm)
+- [ ] Crop marks visible if required
+- [ ] File naming convention followed
+
+### Printer Communication
+- [ ] Confirmed paper type (matte vs glossy)
+- [ ] Confirmed poster size
+- [ ] Provided color profile if required
+- [ ] Verified delivery deadline
+- [ ] Confirmed shipping/pickup arrangements
+- [ ] Discussed backup plan if issues arise
+
+### Backup and Storage
+- [ ] PDF saved with clear filename: `LastName_Conference_Poster.pdf`
+- [ ] Source .tex file backed up
+- [ ] All figure files backed up
+- [ ] Copy saved to cloud storage
+- [ ] Copy saved on USB drive for conference
+- [ ] Digital version ready to email if requested
+
+## Digital Presentation Checks
+
+If presenting digitally or sharing online:
+
+### File Optimization
+- [ ] PDF compressed if >10MB (for email)
+- [ ] Test opens in Adobe Reader
+- [ ] Test opens in Preview (Mac)
+- [ ] Test opens in browser PDF viewers
+- [ ] Test on mobile devices
+
+### Interactive Elements
+- [ ] All QR codes tested and functional
+- [ ] QR codes link to correct URLs
+- [ ] Hyperlinks work (if included)
+- [ ] Links open in new tabs/windows appropriately
+
+### Alternative Formats
+- [ ] PNG version created for social media (if needed)
+- [ ] Thumbnail image created
+- [ ] Poster description/abstract prepared
+- [ ] Hashtags and social media text ready
+
+## Conference-Specific
+
+### Requirements Verification
+- [ ] Poster size matches conference specifications exactly
+- [ ] Orientation matches requirements
+- [ ] File format correct (usually PDF)
+- [ ] Submission deadline met
+- [ ] File naming convention followed
+- [ ] Abstract/description submitted if required
+
+### Physical Preparation
+- [ ] Poster printed and inspected
+- [ ] Backup printed copy prepared
+- [ ] Push pins/mounting materials ready
+- [ ] Poster tube or flat portfolio for transport
+- [ ] Business cards/handouts prepared
+- [ ] Digital backup on laptop/phone
+
+### Presentation Preparation
+- [ ] 30-second elevator pitch prepared
+- [ ] 2-minute summary prepared
+- [ ] 5-minute detailed explanation prepared
+- [ ] Anticipated questions considered
+- [ ] Follow-up materials ready (QR code to paper, etc.)
+
+## Final Sign-Off
+
+Date: ________________
+
+Poster Title: _______________________________________________
+
+Conference: _______________________________________________
+
+Reviewed by: _______________________________________________
+
+All critical items checked: [ ]
+
+Ready for printing: [ ]
+
+Ready for presentation: [ ]
+
+Notes/Issues to address:
+_________________________________________________________
+_________________________________________________________
+_________________________________________________________
+
+---
+
+## Quick Reference: Common Issues
+
+| Issue | Quick Fix |
+|-------|-----------|
+| Large white margins | Reduce margin in documentclass: `margin=5mm` |
+| Text too small | Increase scale: `scale=1.5` in beamerposter |
+| Blurry figures | Use vector graphics (PDF) or higher resolution (600+ DPI) |
+| Colors wrong | Check RGB vs CMYK, test print before final |
+| Fonts not embedded | Compile with: `pdflatex -dEmbedAllFonts=true` |
+| Content cut off | Check total width: columns + spacing + margins = pagewidth |
+| QR codes don't scan | Increase size (min 2×2cm), ensure high contrast |
+| File too large | Compress: `gs -sDEVICE=pdfwrite -dPDFSETTINGS=/printer ...` |
+
+## Checklist Version
+Version 1.0 - For use with LaTeX poster packages (beamerposter, tikzposter, baposter)
+