skills/claude-scientific-skills
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Support for Ginkgo Cloud Lab

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Timothy Kassis
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### Laboratory Automation
- **Opentrons Integration** - Toolkit for creating, editing, and debugging Opentrons Python Protocol API v2 protocols for laboratory automation using Flex and OT-2 robots. Enables automated liquid handling, pipetting workflows, hardware module control (thermocycler, temperature, magnetic, heater-shaker, absorbance plate reader), labware management, and complex protocol development for biological and chemical experiments
- **Ginkgo Cloud Lab** - Submit and manage protocols on Ginkgo Bioworks Cloud Lab (cloud.ginkgo.bio), a web-based interface for autonomous lab execution on Reconfigurable Automation Carts (RACs). Supports three protocols: Cell Free Protein Expression Validation ($39/sample, 5-10 day turnaround), Cell Free Protein Expression Optimization ($199/sample, DoE across 24 conditions, 6-11 days), and Fluorescent Pixel Art Generation ($25/plate, bacterial artwork with 11 fluorescent E. coli strains, 5-7 days). Includes EstiMate AI agent for custom protocol feasibility and pricing
### Electronic Lab Notebooks (ELN)
- **LabArchives Integration** - Toolkit for interacting with LabArchives Electronic Lab Notebook (ELN) REST API. Provides programmatic access to notebooks (backup, retrieval, management), entries (creation, comments, attachments), user authentication, site reports and analytics, and third-party integrations (Protocols.io, GraphPad Prism, SnapGene, Geneious, Jupyter, REDCap). Includes Python scripts for configuration setup, notebook operations, and entry management. Supports multi-regional API endpoints (US, UK, Australia) and OAuth authentication