skills/claude-scientific-skills
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Update SKILL.md files to add double quotation marks for all skills, ensuring clarity and consistency across all entries.

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Haoxuan "Orion" Li
2025-10-20 20:51:50 -07:00
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scientific-packages/anndata/SKILL.md
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---
name: anndata
description: Comprehensive AnnData (Annotated Data) manipulation for single-cell genomics, multi-omics, and structured scientific datasets. Use this skill for: loading/saving .h5ad files, creating AnnData objects from matrices/DataFrames, managing obs/var metadata, storing embeddings (PCA/UMAP/t-SNE) in obsm/varm, using layers for raw/normalized data, concatenating datasets with batch tracking, memory-efficient backed mode for large files, sparse matrix optimization, subsetting with views/copies, converting between formats (CSV/MTX/Loom/Zarr), single-cell RNA-seq workflows, batch integration, quality control filtering, dimensionality reduction storage, and scientific data management best practices.
description: "Comprehensive AnnData (Annotated Data) manipulation for single-cell genomics, multi-omics, and structured scientific datasets. Use this skill for: loading/saving .h5ad files, creating AnnData objects from matrices/DataFrames, managing obs/var metadata, storing embeddings (PCA/UMAP/t-SNE) in obsm/varm, using layers for raw/normalized data, concatenating datasets with batch tracking, memory-efficient backed mode for large files, sparse matrix optimization, subsetting with views/copies, converting between formats (CSV/MTX/Loom/Zarr), single-cell RNA-seq workflows, batch integration, quality control filtering, dimensionality reduction storage, and scientific data management best practices."
---
# AnnData