skills/claude-scientific-skills
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Add support for Modal so researchers can scale compute on demand for heavy computational tasks beyond running locally

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Timothy Kassis
2025-11-10 10:57:05 -08:00
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# Claude Scientific Skills
[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](LICENSE.md)
[![Skills](https://img.shields.io/badge/Skills-116-brightgreen.svg)](#what-s-included)
[![Skills](https://img.shields.io/badge/Skills-117-brightgreen.svg)](#what-s-included)
[![Equivalent Tools](https://img.shields.io/badge/Equivalent_Tools-1002-blue.svg)](#what-s-included)
A comprehensive collection of ready-to-use scientific skills for Claude, curated by the K-Dense team.
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| Category | Count | Description |
|----------|-------|-------------|
| 📊 **Scientific Databases** | 26 | PubMed, PubChem, UniProt, ChEMBL, COSMIC, DrugBank, AlphaFold DB, bioRxiv, and more |
| 🔬 **Scientific Packages** | 67 | BioPython, RDKit, PyTorch, Scanpy, scvi-tools, ESM, NetworkX, SimPy, pydicom, PyHealth, Data Commons, histolab, LaminDB, PathML, PyLabRobot, HypoGeniC, MarkItDown, PufferLib, Stable Baselines3, Vaex, Denario, geniml, gtars, and more |
| 🔬 **Scientific Packages** | 68 | BioPython, RDKit, PyTorch, Scanpy, scvi-tools, ESM, NetworkX, SimPy, pydicom, PyHealth, Data Commons, histolab, LaminDB, PathML, PyLabRobot, HypoGeniC, MarkItDown, Modal, PufferLib, Stable Baselines3, Vaex, Denario, geniml, gtars, and more |
| 🔌 **Scientific Integrations** | 7 | Benchling, DNAnexus, Opentrons, LabArchives, LatchBio, OMERO, Protocols.io |
| 🛠️ **Scientific Helpers** | 2 | Context initialization and resource detection utilities |
| 📚 **Documented Workflows** | 122 | Ready-to-use examples and reference materials |
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---
### 🔬 Scientific Packages
**67 specialized Python packages** organized by domain.
**68 specialized Python packages** organized by domain.
📖 **[Full Package Documentation →](docs/scientific-packages.md)**
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</details>
<details>
<summary><strong>Additional Packages (12 packages)</strong></summary>
<summary><strong>Additional Packages (13 packages)</strong></summary>
- BIOMNI (Multi-omics), ETE Toolkit (Phylogenetics)
- histolab (Digital pathology WSI processing and tile extraction)
- HypoGeniC (Automated hypothesis generation and testing)
- LaminDB (Data framework for biology with FAIR data management, lineage tracking, and ontology integration)
- MarkItDown (Document format conversion to Markdown for LLM processing)
- Modal (Serverless cloud platform for Python with GPUs, autoscaling, and batch processing)
- Paper-2-Web (Academic paper dissemination and presentation)
- PathML (Computational pathology and whole-slide image analysis)
- PyLabRobot (Laboratory automation for liquid handlers, plate readers, and lab equipment)