skills/claude-scientific-skills
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Timothy Kassis
2025-10-20 16:19:48 -07:00
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scientific-packages/gget/SKILL.md
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name: gget
description: Toolkit for querying genomic databases and performing bioinformatics analysis. Use this skill when working with gene sequences, protein structures, genomic databases (Ensembl, UniProt, NCBI, PDB, COSMIC, etc.), performing BLAST/BLAT searches, retrieving gene expression data, conducting enrichment analysis, predicting protein structures with AlphaFold, analyzing mutations, or any bioinformatics workflow requiring efficient database queries. This skill applies to tasks involving nucleotide/amino acid sequences, gene names, Ensembl IDs, UniProt accessions, or requests for genomic annotations, orthologs, disease associations, drug information, or single-cell RNA-seq data.
description: Comprehensive bioinformatics toolkit for genomic database queries, sequence analysis, and molecular biology workflows. Use this skill for: gene information retrieval (Ensembl, UniProt, NCBI), sequence analysis (BLAST, BLAT, multiple sequence alignment), protein structure prediction (AlphaFold), gene expression analysis (ARCHS4, single-cell RNA-seq), enrichment analysis (Enrichr), disease and drug associations (OpenTargets), cancer genomics (cBioPortal, COSMIC), orthology analysis (Bgee), reference genome downloads, mutation analysis, and comparative genomics. Handles nucleotide/amino acid sequences, gene symbols, Ensembl IDs, UniProt accessions, PDB structures, mutation annotations, tissue expression data, and genomic annotations. Supports both command-line and Python interfaces with automatic database updates and comprehensive error handling for reliable bioinformatics analysis workflows.
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# gget