skills/claude-scientific-skills
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fix(attribution): correct source repo URL to SuperiorByteWorks-LLC/agent-project

Browse Source 
All 40 references to borealBytes/opencode updated to the correct source:
https://github.com/SuperiorByteWorks-LLC/agent-project

Affected files: SKILL.md, all 24 diagram guides, 9 templates, issue and PR
docs, plus assets/examples/example-research-report.md (new file).

The example report demonstrates full skill usage: flowchart, sequence,
timeline, xychart, radar diagrams — all with accTitle/accDescr and
classDef colors, no %%{init}. Covers HEK293T CRISPR editing efficiency
as a realistic scientific context.
This commit is contained in:
Clayton Young
2026-02-19 18:29:14 -05:00
parent 97d7901870
commit ea5a287cf9
39 changed files with 261 additions and 43 deletions
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4
docs/project/issues/issue-00000001-markdown-mermaid-skill.md
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@@ -116,7 +116,7 @@ flowchart LR
### Content sources
All style guides and templates ported from the `borealBytes/opencode` repository under Apache-2.0 license with attribution retained[^3].
All style guides and templates ported from the `SuperiorByteWorks-LLC/agent-project` repository under Apache-2.0 license with attribution retained[^3].
| Source path | Destination |
| ------------------------------------------- | ---------------------------------------------------- |
@@ -154,7 +154,7 @@ scientific-skills/markdown-mermaid-writing/
[^2]: Orion Li (K-Dense), responding: "Thanks for letting us know! We'll make sure to include this into our sauce when we implement our upcoming reorganization of the skills." — K-Dense Discord, 2026-02-19.
[^3]: Boreal Bytes / Superior Byte Works, LLC. `opencode` repository. https://github.com/borealBytes/opencode. Apache-2.0 License.
[^3]: Boreal Bytes / Superior Byte Works, LLC. `opencode` repository. https://github.com/SuperiorByteWorks-LLC/agent-project. Apache-2.0 License.
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docs/project/pr/pr-00000001-markdown-mermaid-skill.md
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@@ -16,7 +16,7 @@
### What changed and why
This PR adds a new skill — `markdown-mermaid-writing` — that establishes markdown with embedded Mermaid diagrams as the **default and canonical documentation format** for all scientific skills. The skill ports comprehensive style guides, 24 diagram type references, and 9 document templates from the `borealBytes/opencode` project, and codifies the "source format" philosophy proposed in the K-Dense Discord on 2026-02-19.
This PR adds a new skill — `markdown-mermaid-writing` — that establishes markdown with embedded Mermaid diagrams as the **default and canonical documentation format** for all scientific skills. The skill ports comprehensive style guides, 24 diagram type references, and 9 document templates from the `SuperiorByteWorks-LLC/agent-project` project, and codifies the "source format" philosophy proposed in the K-Dense Discord on 2026-02-19.
The motivation: scientific outputs currently default to Python-generated or AI-generated images for diagrams. This PR inverts that priority — text-based Mermaid diagrams are the source of truth, downstream image generation is secondary. This gives users version-controlled, token-efficient, universally renderable documentation by default.
@@ -179,7 +179,7 @@ No ADR created — this is a documentation addition with no architectural tradeo
## 🔗 References
- [Issue #00000001](../issues/issue-00000001-markdown-mermaid-skill.md) — Feature request
- [opencode repository](https://github.com/borealBytes/opencode) — Source of ported style guides (Apache-2.0)
- [opencode repository](https://github.com/SuperiorByteWorks-LLC/agent-project) — Source of ported style guides (Apache-2.0)
- [K-Dense Discord thread](https://discord.com/channels/k-dense) — Originating conversation, 2026-02-19
---