Commit Graph

95 Commits

Author SHA1 Message Date
Timothy Kassis
49567890a6 Add BRENDA enzyme database 2025-12-03 17:29:05 -08:00
Timothy Kassis
90de96a99b Add support for generating scientific illustrations using Nano Banan Pro and Flux.2 Pro 2025-11-30 09:30:58 -05:00
Timothy Kassis
7e8deebf96 Add support for Qiskit from IBM: software stack for quantum computing and algorithms research. Build, optimize, and execute quantum workloads at scale. 2025-11-30 08:46:41 -05:00
Timothy Kassis
7763491813 Add support for PennyLane: a cross-platform library for quantum computing, quantum machine learning, and quantum chemistry. 2025-11-30 08:27:24 -05:00
Timothy Kassis
16e47a1755 Add support for Cirq: library for writing, manipulating, and optimizing quantum circuits, and then running them on quantum computers and quantum simulators. 2025-11-30 08:02:58 -05:00
Timothy Kassis
a077cee836 Add support for QuTiP: an open-source software for simulating the dynamics of open quantum systems. 2025-11-30 07:46:17 -05:00
Timothy Kassis
7caef7df68 Fix Reactome database nesting 2025-11-30 06:28:41 -05:00
Timothy Kassis
6ac2a15e39 Add support for GeoPandas 2025-11-27 18:57:26 -05:00
Timothy Kassis
41f272c2bd Add Plotly support 2025-11-27 18:47:08 -05:00
Timothy Kassis
ea638c5618 Add support for Adaptyv for protein design 2025-11-24 19:52:45 -05:00
Timothy Kassis
65b39d45d6 Add support for OpenAlex 2025-11-19 13:38:32 -08:00
Timothy Kassis
c078c98ad2 Add Perplexity search 2025-11-16 16:16:21 -08:00
Timothy Kassis
2fc3e6a88e Updated installation instructions for all skills to always use uv pip install 2025-11-16 15:34:52 -08:00
Timothy Kassis
d94f21c51f Add support for fluidsim for computational fluid dynamics 2025-11-13 19:46:29 -08:00
Timothy Kassis
63f257d81e Consolidate plugins 2025-11-13 18:57:02 -08:00
Timothy Kassis
cc99fdb57d Add support for Modal so researchers can scale compute on demand for heavy computational tasks beyond running locally 2025-11-10 10:57:05 -08:00
Timothy Kassis
82663ee1de Bump version 2025-11-07 09:37:59 -08:00
Timothy Kassis
1225ddecf1 Add support for both geniml and gtars 2025-11-04 10:22:03 -08:00
Timothy Kassis
63a4293f1a Add support for the Denario AI scientist 2025-11-03 17:04:20 -08:00
Timothy Kassis
d57129ca3f Bump version 2025-11-03 16:21:47 -08:00
Timothy Kassis
862445f531 Add support for Stable-Baselines3, a PyTorch-based library providing reliable, well-tested implementations of popular deep reinforcement learning algorithms with a simple and consistent API for research and training. 2025-11-02 14:54:16 -08:00
Timothy Kassis
b8c4d2bae1 Add support for PufferLib which is a high-performance, open-source Python toolkit that wraps complex RL environments to look like standard Gym/PettingZoo interfaces and supports massively parallel simulation (1M+ steps/sec) to accelerate deep reinforcement learning. 2025-11-02 14:52:06 -08:00
Timothy Kassis
27d6ee387f Add support for Vaex for fast, memory-efficient exploration and visualization of large tabular datasets using lazy, out-of-core computation. 2025-11-02 14:43:20 -08:00
Timothy Kassis
f32b3f8b42 Add support for SymPY for symbolic mathematics that enables algebraic manipulation, equation solving, calculus, and symbolic computation directly in Python. 2025-11-02 14:30:20 -08:00
Timothy Kassis
ed2d1c4aeb Add support for NetworkX for creating, analyzing, and visualizing complex networks and graphs. 2025-11-02 14:19:20 -08:00
Timothy Kassis
7e3fae3ad1 Add support to LaminDB 2025-10-31 11:39:54 -07:00
Timothy Kassis
346010a1bf Add Markitdown skill to read all sorts of documents 2025-10-28 16:31:01 -07:00
Timothy Kassis
82901e9fbe Add hypothesis generation using HypoGeniC and HypoRefine 2025-10-28 12:53:43 -07:00
Timothy Kassis
981823a71a Add ScholarEval as a thinking framework 2025-10-28 10:45:34 -07:00
Timothy Kassis
1f03feda5c Add protocols.io integration 2025-10-26 11:09:03 -07:00
Timothy Kassis
44285238c4 Fix context initialization by using AGENTS.md instead of AGENT.md 2025-10-26 10:18:45 -07:00
Timothy Kassis
04d528c4bc Added support for NeuroKit2 2025-10-25 21:38:31 -07:00
Timothy Kassis
a5c2ed9bb6 Add literature review skill 2025-10-25 10:55:36 -07:00
Timothy Kassis
564bd39835 Add support for HistoLab 2025-10-24 13:41:06 -07:00
Timothy Kassis
ca6fd369d7 Add DrugBank access 2025-10-24 09:04:43 -07:00
Timothy Kassis
d923063309 Change license to MIT allowing commercial use! 2025-10-23 20:48:01 -07:00
Timothy Kassis
43dc67a316 Version bump 2025-10-23 10:02:31 -07:00
Timothy Kassis
ee73143b53 Add scikit-survival for survival analysis allowing users to establish connections between covariates and time of an event 2025-10-23 10:02:16 -07:00
Timothy Kassis
b1df506eba Add support for PyHealth making healthcare AI simpler and more powerful 2025-10-23 09:50:07 -07:00
Timothy Kassis
bb1c9f4573 Add support for PyDicom 2025-10-23 09:35:46 -07:00
Timothy Kassis
6cb25aea28 Add SimPy a process-based discrete-event simulation framework 2025-10-23 09:26:44 -07:00
Timothy Kassis
92b4e024d1 Addition of ESM, SHAP, scvi-tools...and much more! 2025-10-23 09:12:41 -07:00
Timothy Kassis
3fbd9ba6a9 Add utility skill to get system resources 2025-10-23 09:12:01 -07:00
Timothy Kassis
87a608730c Add support for bioRxiv database search and paper downloading 2025-10-23 08:51:45 -07:00
Timothy Kassis
0943c243bb Added full support for ToolUniverse. Claude Code can now use the tools it provide as it needs without the MCP being a gateway. 2025-10-22 14:59:27 -07:00
Timothy Kassis
0b5a648e98 Add Paper2Web 2025-10-22 08:50:06 -07:00
Timothy Kassis
77822efeed Improved Biomni support 2025-10-22 08:38:06 -07:00
Timothy Kassis
08608e824a Use Agent.md 2025-10-21 17:35:37 -07:00
Timothy Kassis
000a45c0e9 Apply best practices 2025-10-21 12:50:07 -07:00
Timothy Kassis
998a514f74 Update biopython skill 2025-10-21 10:47:34 -07:00