81 Commits

Author	SHA1	Message	Date
Timothy Kassis	63f257d81e	Consolidate plugins	2025-11-13 18:57:02 -08:00
Timothy Kassis	cc99fdb57d	Add support for Modal so researchers can scale compute on demand for heavy computational tasks beyond running locally	2025-11-10 10:57:05 -08:00
Timothy Kassis	82663ee1de	Bump version	2025-11-07 09:37:59 -08:00
Timothy Kassis	1225ddecf1	Add support for both geniml and gtars	2025-11-04 10:22:03 -08:00
Timothy Kassis	63a4293f1a	Add support for the Denario AI scientist	2025-11-03 17:04:20 -08:00
Timothy Kassis	d57129ca3f	Bump version	2025-11-03 16:21:47 -08:00
Timothy Kassis	862445f531	Add support for Stable-Baselines3, a PyTorch-based library providing reliable, well-tested implementations of popular deep reinforcement learning algorithms with a simple and consistent API for research and training.	2025-11-02 14:54:16 -08:00
Timothy Kassis	b8c4d2bae1	Add support for PufferLib which is a high-performance, open-source Python toolkit that wraps complex RL environments to look like standard Gym/PettingZoo interfaces and supports massively parallel simulation (1M+ steps/sec) to accelerate deep reinforcement learning.	2025-11-02 14:52:06 -08:00
Timothy Kassis	27d6ee387f	Add support for Vaex for fast, memory-efficient exploration and visualization of large tabular datasets using lazy, out-of-core computation.	2025-11-02 14:43:20 -08:00
Timothy Kassis	f32b3f8b42	Add support for SymPY for symbolic mathematics that enables algebraic manipulation, equation solving, calculus, and symbolic computation directly in Python.	2025-11-02 14:30:20 -08:00
Timothy Kassis	ed2d1c4aeb	Add support for NetworkX for creating, analyzing, and visualizing complex networks and graphs.	2025-11-02 14:19:20 -08:00
Timothy Kassis	7e3fae3ad1	Add support to LaminDB	2025-10-31 11:39:54 -07:00
Timothy Kassis	346010a1bf	Add Markitdown skill to read all sorts of documents	2025-10-28 16:31:01 -07:00
Timothy Kassis	82901e9fbe	Add hypothesis generation using HypoGeniC and HypoRefine	2025-10-28 12:53:43 -07:00
Timothy Kassis	981823a71a	Add ScholarEval as a thinking framework	2025-10-28 10:45:34 -07:00
Timothy Kassis	1f03feda5c	Add protocols.io integration	2025-10-26 11:09:03 -07:00
Timothy Kassis	44285238c4	Fix context initialization by using AGENTS.md instead of AGENT.md	2025-10-26 10:18:45 -07:00
Timothy Kassis	04d528c4bc	Added support for NeuroKit2	2025-10-25 21:38:31 -07:00
Timothy Kassis	a5c2ed9bb6	Add literature review skill	2025-10-25 10:55:36 -07:00
Timothy Kassis	564bd39835	Add support for HistoLab	2025-10-24 13:41:06 -07:00
Timothy Kassis	ca6fd369d7	Add DrugBank access	2025-10-24 09:04:43 -07:00
Timothy Kassis	d923063309	Change license to MIT allowing commercial use!	2025-10-23 20:48:01 -07:00
Timothy Kassis	43dc67a316	Version bump	2025-10-23 10:02:31 -07:00
Timothy Kassis	ee73143b53	Add scikit-survival for survival analysis allowing users to establish connections between covariates and time of an event	2025-10-23 10:02:16 -07:00
Timothy Kassis	b1df506eba	Add support for PyHealth making healthcare AI simpler and more powerful	2025-10-23 09:50:07 -07:00
Timothy Kassis	bb1c9f4573	Add support for PyDicom	2025-10-23 09:35:46 -07:00
Timothy Kassis	6cb25aea28	Add SimPy a process-based discrete-event simulation framework	2025-10-23 09:26:44 -07:00
Timothy Kassis	92b4e024d1	Addition of ESM, SHAP, scvi-tools...and much more!	2025-10-23 09:12:41 -07:00
Timothy Kassis	3fbd9ba6a9	Add utility skill to get system resources	2025-10-23 09:12:01 -07:00
Timothy Kassis	87a608730c	Add support for bioRxiv database search and paper downloading	2025-10-23 08:51:45 -07:00
Timothy Kassis	0943c243bb	Added full support for ToolUniverse. Claude Code can now use the tools it provide as it needs without the MCP being a gateway.	2025-10-22 14:59:27 -07:00
Timothy Kassis	0b5a648e98	Add Paper2Web	2025-10-22 08:50:06 -07:00
Timothy Kassis	77822efeed	Improved Biomni support	2025-10-22 08:38:06 -07:00
Timothy Kassis	08608e824a	Use Agent.md	2025-10-21 17:35:37 -07:00
Timothy Kassis	000a45c0e9	Apply best practices	2025-10-21 12:50:07 -07:00
Timothy Kassis	998a514f74	Update biopython skill	2025-10-21 10:47:34 -07:00
Timothy Kassis	11da596765	Update Huggingface Transformer	2025-10-21 10:30:38 -07:00
Timothy Kassis	1a9149b089	Improve Pytorch Lightning skill	2025-10-21 10:19:15 -07:00
Timothy Kassis	aacc29a778	Add TorchDrug	2025-10-21 10:03:00 -07:00
Timothy Kassis	71e1c91f12	Better adherence to recommendations	2025-10-21 09:43:34 -07:00
Timothy Kassis	32109101d0	Fix descriptions to adhere to character limits	2025-10-21 09:33:30 -07:00
Timothy Kassis	41f15bd29c	Add scientific writing skill	2025-10-20 22:56:17 -07:00
Timothy Kassis	99f3b961e0	Add LatchBio integration	2025-10-20 22:42:09 -07:00
Timothy Kassis	16143f1167	Add USPTO and OpenTargets databases	2025-10-20 22:34:37 -07:00
Timothy Kassis	fd9f5abbbe	Add FDA database	2025-10-20 22:14:49 -07:00
Timothy Kassis	a317857db5	Add ClincialTrials database	2025-10-20 22:04:13 -07:00
Timothy Kassis	07f81f2ff3	Add integrations	2025-10-20 21:56:27 -07:00
Timothy Kassis	2273130f5f	Add benchling	2025-10-20 21:28:25 -07:00
Timothy Kassis	9ce9745de6	Add statmodels	2025-10-20 20:17:16 -07:00
Timothy Kassis	50b1b5e607	Add pysam	2025-10-20 19:02:16 -07:00