Commit Graph

15 Commits

Author SHA1 Message Date
Robert
95a3b74b3b Move Neuropixels-Analysis to new Neuroscience category
Create new "🧠 Neuroscience & Electrophysiology" category for better
classification. Neuropixels is research neuroscience (animal models,
invasive recordings) rather than clinical healthcare AI.

- Remove from Healthcare AI section
- Add new Neuroscience & Electrophysiology section
- Keep NeuroKit2 in Healthcare AI (surface biosignals, clinical focus)

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-17 11:20:00 -05:00
Robert
312f18ae60 Add neuropixels-analysis skill for extracellular electrophysiology
Adds comprehensive toolkit for analyzing Neuropixels high-density neural
recordings using SpikeInterface, Allen Institute, and IBL best practices.

Features:
- Data loading from SpikeGLX, Open Ephys, and NWB formats
- Preprocessing pipelines (filtering, phase shift, CAR, bad channel detection)
- Motion/drift estimation and correction
- Spike sorting integration (Kilosort4, SpykingCircus2, Mountainsort5)
- Quality metrics computation (SNR, ISI violations, presence ratio)
- Automated curation using Allen/IBL criteria
- AI-assisted visual curation for uncertain units
- Export to Phy and NWB formats

Supports Neuropixels 1.0 and 2.0 probes.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-17 11:06:28 -05:00
Timothy Kassis
78331e1b37 Remove all writing skills for upcoming upgrade 2025-12-07 13:54:58 -08:00
Timothy Kassis
49567890a6 Add BRENDA enzyme database 2025-12-03 17:29:05 -08:00
Timothy Kassis
90de96a99b Add support for generating scientific illustrations using Nano Banan Pro and Flux.2 Pro 2025-11-30 09:30:58 -05:00
Timothy Kassis
7e8deebf96 Add support for Qiskit from IBM: software stack for quantum computing and algorithms research. Build, optimize, and execute quantum workloads at scale. 2025-11-30 08:46:41 -05:00
Timothy Kassis
7763491813 Add support for PennyLane: a cross-platform library for quantum computing, quantum machine learning, and quantum chemistry. 2025-11-30 08:27:24 -05:00
Timothy Kassis
a077cee836 Add support for QuTiP: an open-source software for simulating the dynamics of open quantum systems. 2025-11-30 07:46:17 -05:00
Timothy Kassis
6ac2a15e39 Add support for GeoPandas 2025-11-27 18:57:26 -05:00
Timothy Kassis
41f272c2bd Add Plotly support 2025-11-27 18:47:08 -05:00
Timothy Kassis
ea638c5618 Add support for Adaptyv for protein design 2025-11-24 19:52:45 -05:00
Timothy Kassis
65b39d45d6 Add support for OpenAlex 2025-11-19 13:38:32 -08:00
Timothy Kassis
c078c98ad2 Add Perplexity search 2025-11-16 16:16:21 -08:00
Timothy Kassis
d94f21c51f Add support for fluidsim for computational fluid dynamics 2025-11-13 19:46:29 -08:00
Timothy Kassis
ad2dfc3446 Update readme 2025-11-13 19:17:42 -08:00