5 Commits

Author	SHA1	Message	Date
Jeremy Leipzig	e3a7a85122	Remove multiple advanced export sections ... - Remove VEP annotation preparation section - Remove Cloud Export (S3) section - Remove Export Validation section - Remove Efficient Export Strategies section - Simplify export guide to focus on core export functionality - Maintain essential VCF/BCF and TSV export examples	2026-02-24 11:17:41 -07:00
Jeremy Leipzig	518261c4f2	Remove Streaming Export for Large Datasets section ... - Remove chunked export functionality - Remove parallel export functionality - Simplify export guide to focus on basic export operations	2026-02-24 11:13:01 -07:00
Jeremy Leipzig	70a34bd652	Remove Custom Field Selection and Population-Specific Exports sections ... - Remove detailed custom TSV field configuration section - Remove population-based export workflow section - Simplify export guide to focus on core functionality	2026-02-24 11:11:53 -07:00
Jeremy Leipzig	3f76537f75	Add critical VCF ingestion requirements ... - VCFs must be single-sample (multi-sample not supported) - Index files (.csi or .tbi) are required for all VCF/BCF files - Add indexing examples with bcftools and tabix - Document requirements prominently in both main skill and ingestion guide	2026-02-24 11:07:20 -07:00
Jeremy Leipzig	3c98f0cada	Add TileDB-VCF skill for genomic variant analysis ... - Add comprehensive TileDB-VCF skill by Jeremy Leipzig - Covers open source TileDB-VCF for learning and moderate-scale work - Emphasizes TileDB-Cloud for large-scale production genomics (1000+ samples) - Includes detailed reference documentation: * ingestion.md - Dataset creation and VCF ingestion * querying.md - Efficient variant queries * export.md - Data export and format conversion * population_genomics.md - GWAS and population analysis workflows - Features accurate TileDB-Cloud API patterns from official repository - Highlights scale transition: open source → TileDB-Cloud for enterprise	2026-02-24 09:31:48 -07:00