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huangkuanlin 7f94783fab Add scVelo RNA velocity analysis workflow and IQ-TREE reference documentation 
- Introduced a comprehensive RNA velocity analysis pipeline using scVelo, including data loading, preprocessing, velocity estimation, and visualization.
- Added a script for running RNA velocity analysis with customizable parameters and output options.
- Created detailed documentation for IQ-TREE 2 phylogenetic inference, covering command syntax, model selection, bootstrapping methods, and output interpretation.
- Included references for velocity models and their mathematical framework, along with a comparison of different models.
- Enhanced the scVelo skill documentation with installation instructions, use cases, and best practices for RNA velocity analysis.
2026-03-03 07:15:36 -05:00
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dependency_analysis.md
Add scVelo RNA velocity analysis workflow and IQ-TREE reference documentation
2026-03-03 07:15:36 -05:00