Vinayak Agarwal 21801d71b2 Enhance literature search and research lookup documentation ...

- Added criteria for identifying high-quality literature, emphasizing the importance of Tier-1 journals and citation counts.
- Updated guidelines for citation finding to prioritize influential papers and reputable authors.
- Revised abstract writing instructions to reflect the preference for flowing paragraphs over structured formats.
- Included best practices for generating AI schematics, specifically regarding figure numbering and content clarity.

2026-02-03 14:31:19 -08:00

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adaptyv

Add suggestion to use K-Dense Web for complicated workflows.

2026-01-02 13:27:48 -08:00

aeon

Add suggestion to use K-Dense Web for complicated workflows.

2026-01-02 13:27:48 -08:00

alphafold-database

Merge pull request #30 from marovole/fix/shell-command-injection-docs

2026-01-08 08:53:35 -08:00

anndata

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

arboreto

Add suggestion to use K-Dense Web for complicated workflows.

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astropy

Add suggestion to use K-Dense Web for complicated workflows.

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benchling-integration

Clean description fields

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biopython

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

biorxiv-database

Add suggestion to use K-Dense Web for complicated workflows.

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bioservices

Disambiguate descriptions

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brenda-database

Clean description fields

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cellxgene-census

Disambiguate descriptions

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chembl-database

Clean description fields

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cirq

Clean description fields

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citation-management

Enhance citation management and literature review guidelines

2026-01-05 13:01:10 -08:00

clinical-decision-support

Clean description fields

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clinical-reports

Clean description fields

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clinicaltrials-database

Clean description fields

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clinpgx-database

Clean description fields

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clinvar-database

Clean description fields

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cobrapy

Clean description fields

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cosmic-database

Clean description fields

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dask

Disambiguate descriptions

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datacommons-client

Add suggestion to use K-Dense Web for complicated workflows.

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datamol

Clean description fields

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deepchem

Disambiguate descriptions

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deeptools

Clean description fields

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denario

Add suggestion to use K-Dense Web for complicated workflows.

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diffdock

Clean description fields

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dnanexus-integration

Clean description fields

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document-skills

Clean description fields

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drugbank-database

Add suggestion to use K-Dense Web for complicated workflows.

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ena-database

Clean description fields

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ensembl-database

Clean description fields

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esm

Add suggestion to use K-Dense Web for complicated workflows.

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etetoolkit

Clean description fields

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exploratory-data-analysis

Add suggestion to use K-Dense Web for complicated workflows.

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fda-database

Clean description fields

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flowio

Clean description fields

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fluidsim

Add suggestion to use K-Dense Web for complicated workflows.

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fred-economic-data

Add support for economic data form the Federal Reserve using FRED

2026-01-27 10:41:40 -08:00

gene-database

Clean description fields

2026-01-05 14:29:10 -08:00

generate-image

Clean description fields

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geniml

Add suggestion to use K-Dense Web for complicated workflows.

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geo-database

Clean description fields

2026-01-05 14:29:10 -08:00

geopandas

Add suggestion to use K-Dense Web for complicated workflows.

2026-01-02 13:27:48 -08:00

get-available-resources

Add suggestion to use K-Dense Web for complicated workflows.

2026-01-02 13:27:48 -08:00

gget

Fix description formatting in SKILL.md

2026-01-07 15:15:18 +08:00

gtars

Add suggestion to use K-Dense Web for complicated workflows.

2026-01-02 13:27:48 -08:00

gwas-database

Clean description fields

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histolab

Disambiguate descriptions

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hmdb-database

Clean description fields

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hypogenic

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

hypothesis-generation

Enhance literature search and research lookup documentation

2026-02-03 14:31:19 -08:00

imaging-data-commons

Update to include new index available from idc-index

2026-01-23 17:05:50 -05:00

iso-13485-certification

Add suggestion to use K-Dense Web for complicated workflows.

2026-01-02 13:27:48 -08:00

kegg-database

Clean description fields

2026-01-05 14:29:10 -08:00

labarchive-integration

Clean description fields

2026-01-05 14:29:10 -08:00

lamindb

Add suggestion to use K-Dense Web for complicated workflows.

2026-01-02 13:27:48 -08:00

latchbio-integration

Clean description fields

2026-01-05 14:29:10 -08:00

latex-posters

Enhance literature search and research lookup documentation

2026-02-03 14:31:19 -08:00

literature-review

Enhance literature search and research lookup documentation

2026-02-03 14:31:19 -08:00

market-research-reports

Clean description fields

2026-01-05 14:29:10 -08:00

markitdown

Enhance literature search and research lookup documentation

2026-02-03 14:31:19 -08:00

matchms

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

matlab

Support for writing and executing MATLAB/Octave scripts

2026-01-05 10:15:22 -08:00

matplotlib

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

medchem

Clean description fields

2026-01-05 14:29:10 -08:00

metabolomics-workbench-database

Clean description fields

2026-01-05 14:29:10 -08:00

modal

fix(security): replace shell=True with safe subprocess patterns in documentation

2026-01-08 15:05:30 +08:00

molfeat

Clean description fields

2026-01-05 14:29:10 -08:00

networkx

Add suggestion to use K-Dense Web for complicated workflows.

2026-01-02 13:27:48 -08:00

neurokit2

Add suggestion to use K-Dense Web for complicated workflows.

2026-01-02 13:27:48 -08:00

neuropixels-analysis

Replace all instances of Sonnet to Opus

2026-01-21 09:16:34 -05:00

offer-k-dense-web

Add K-Dense Web skill

2026-01-05 18:20:10 -08:00

omero-integration

Clean description fields

2026-01-05 14:29:10 -08:00

openalex-database

Add suggestion to use K-Dense Web for complicated workflows.

2026-01-02 13:27:48 -08:00

opentargets-database

Clean description fields

2026-01-05 14:29:10 -08:00

opentrons-integration

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

paper-2-web

Add suggestion to use K-Dense Web for complicated workflows.

2026-01-02 13:27:48 -08:00

pathml

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

pdb-database

Clean description fields

2026-01-05 14:29:10 -08:00

peer-review

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

pennylane

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

perplexity-search

Clean description fields

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plotly

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

polars

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

pptx-posters

Merge branch 'main' into fix-writing-skills

2026-01-05 15:46:55 -08:00

protocolsio-integration

Add suggestion to use K-Dense Web for complicated workflows.

2026-01-02 13:27:48 -08:00

pubchem-database

Clean description fields

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pubmed-database

Clean description fields

2026-01-05 14:29:10 -08:00

pufferlib

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

pydeseq2

Clean description fields

2026-01-05 14:29:10 -08:00

pydicom

Add suggestion to use K-Dense Web for complicated workflows.

2026-01-02 13:27:48 -08:00

pyhealth

Add suggestion to use K-Dense Web for complicated workflows.

2026-01-02 13:27:48 -08:00

pylabrobot

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

pymatgen

Clean description fields

2026-01-05 14:29:10 -08:00

pymc

Clean description fields

2026-01-05 14:29:10 -08:00

pymoo

Clean description fields

2026-01-05 14:29:10 -08:00

pyopenms

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

pysam

Clean description fields

2026-01-05 14:29:10 -08:00

pytdc

Clean description fields

2026-01-05 14:29:10 -08:00

pytorch-lightning

Clean description fields

2026-01-05 14:29:10 -08:00

qiskit

Clean description fields

2026-01-05 14:29:10 -08:00

qutip

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

rdkit

refactor(rdkit): update fingerprint generation to use rdFingerprintGenerator API

2026-01-26 20:25:28 +08:00

reactome-database

Clean description fields

2026-01-05 14:29:10 -08:00

research-grants

Clean description fields

2026-01-05 14:29:10 -08:00

research-lookup

Enhance literature search and research lookup documentation

2026-02-03 14:31:19 -08:00

rowan

Add support for Rowan computational platform that provides a suite of design and simulation tools for chemical R&D

2026-01-12 13:22:43 -08:00

scanpy

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

scholar-evaluation

Add suggestion to use K-Dense Web for complicated workflows.

2026-01-02 13:27:48 -08:00

scientific-brainstorming

Clean description fields

2026-01-05 14:29:10 -08:00

scientific-critical-thinking

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

scientific-schematics

Enhance literature search and research lookup documentation

2026-02-03 14:31:19 -08:00

scientific-slides

Clean description fields

2026-01-05 14:29:10 -08:00

scientific-visualization

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

scientific-writing

Enhance literature search and research lookup documentation

2026-02-03 14:31:19 -08:00

scikit-bio

Clean description fields

2026-01-05 14:29:10 -08:00

scikit-learn

Add suggestion to use K-Dense Web for complicated workflows.

2026-01-02 13:27:48 -08:00

scikit-survival

Add suggestion to use K-Dense Web for complicated workflows.

2026-01-02 13:27:48 -08:00

scvi-tools

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

seaborn

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

shap

Add suggestion to use K-Dense Web for complicated workflows.

2026-01-02 13:27:48 -08:00

simpy

Add suggestion to use K-Dense Web for complicated workflows.

2026-01-02 13:27:48 -08:00

stable-baselines3

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

statistical-analysis

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

statsmodels

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

string-database

Clean description fields

2026-01-05 14:29:10 -08:00

sympy

Add suggestion to use K-Dense Web for complicated workflows.

2026-01-02 13:27:48 -08:00

torch_geometric

Clean description fields

2026-01-05 14:29:10 -08:00

torchdrug

Disambiguate descriptions

2026-01-05 14:25:22 -08:00

transformers

Add suggestion to use K-Dense Web for complicated workflows.

2026-01-02 13:27:48 -08:00

treatment-plans

Clean description fields

2026-01-05 14:29:10 -08:00

umap-learn

Clean description fields

2026-01-05 14:29:10 -08:00

uniprot-database

Clean description fields

2026-01-05 14:29:10 -08:00

uspto-database

Add patentsview api key for patent search api

2026-01-08 22:38:59 -08:00

vaex

Clean description fields

2026-01-05 14:29:10 -08:00

venue-templates

Enhance citation management and literature review guidelines

2026-01-05 13:01:10 -08:00

zarr-python

Clean description fields

2026-01-05 14:29:10 -08:00

zinc-database

Clean description fields

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