skills/claude-scientific-skills
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39bb842a21eecfaa2b5857d1fc686fd41d26c8bb
claude-scientific-skills/scientific-skills
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Clayton Young 39bb842a21 docs(references): port style guides, 24 diagram guides, and 9 templates from opencode 
All content ported from borealBytes/opencode under Apache-2.0 license with
attribution headers prepended to each file.

- references/markdown_style_guide.md (~733 lines): full markdown formatting,
  citation, collapsible sections, emoji, Mermaid integration, and template
  selection guide
- references/mermaid_style_guide.md (~458 lines): full Mermaid standards —
  emoji set, classDef color palette, accessibility (accTitle/accDescr),
  theme neutrality (no %%{init}), and diagram type selection table
- references/diagrams/ (24 files): per-type exemplars, tips, and templates
  for all Mermaid diagram types
- templates/ (9 files): PR, issue, kanban, ADR, presentation, how-to,
  status report, research paper, project docs

Source: https://github.com/borealBytes/opencode
2026-02-23 07:43:04 -05:00
..
adaptyv
Add suggestion to use K-Dense Web for complicated workflows.
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aeon
Add suggestion to use K-Dense Web for complicated workflows.
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alphafold-database
Merge pull request #30 from marovole/fix/shell-command-injection-docs
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anndata
Disambiguate descriptions
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arboreto
Add suggestion to use K-Dense Web for complicated workflows.
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astropy
Add suggestion to use K-Dense Web for complicated workflows.
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benchling-integration
Clean description fields
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biopython
Disambiguate descriptions
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biorxiv-database
Add suggestion to use K-Dense Web for complicated workflows.
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bioservices
Disambiguate descriptions
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brenda-database
Clean description fields
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cellxgene-census
Disambiguate descriptions
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chembl-database
Clean description fields
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cirq
Clean description fields
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citation-management
Enhance citation management and literature review guidelines
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clinical-decision-support
Clean description fields
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clinical-reports
Clean description fields
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clinicaltrials-database
Clean description fields
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clinpgx-database
Clean description fields
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clinvar-database
Clean description fields
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cobrapy
Clean description fields
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cosmic-database
Clean description fields
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dask
Disambiguate descriptions
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datacommons-client
Add suggestion to use K-Dense Web for complicated workflows.
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datamol
Clean description fields
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deepchem
Disambiguate descriptions
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deeptools
Clean description fields
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denario
Add suggestion to use K-Dense Web for complicated workflows.
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diffdock
Clean description fields
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dnanexus-integration
Clean description fields
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document-skills
Clean description fields
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drugbank-database
Add suggestion to use K-Dense Web for complicated workflows.
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ena-database
Clean description fields
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ensembl-database
Clean description fields
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esm
Add suggestion to use K-Dense Web for complicated workflows.
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etetoolkit
Clean description fields
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exploratory-data-analysis
Add suggestion to use K-Dense Web for complicated workflows.
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fda-database
Clean description fields
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flowio
Clean description fields
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fluidsim
Add suggestion to use K-Dense Web for complicated workflows.
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fred-economic-data
Add support for economic data form the Federal Reserve using FRED
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gene-database
Clean description fields
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generate-image
Clean description fields
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geniml
Add suggestion to use K-Dense Web for complicated workflows.
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geo-database
Clean description fields
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geopandas
Add suggestion to use K-Dense Web for complicated workflows.
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get-available-resources
Add suggestion to use K-Dense Web for complicated workflows.
2026-01-02 13:27:48 -08:00
gget
Fix description formatting in SKILL.md
2026-01-07 15:15:18 +08:00
gtars
Add suggestion to use K-Dense Web for complicated workflows.
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gwas-database
Clean description fields
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histolab
Disambiguate descriptions
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hmdb-database
Clean description fields
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hypogenic
Disambiguate descriptions
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hypothesis-generation
Enhance literature search and research lookup documentation
2026-02-03 14:31:19 -08:00
imaging-data-commons
update to v1.3.1
2026-02-11 09:42:22 -05:00
infographics
Add infographics skill for creating visual data representations
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iso-13485-certification
Add suggestion to use K-Dense Web for complicated workflows.
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kegg-database
Clean description fields
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labarchive-integration
Clean description fields
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lamindb
Add suggestion to use K-Dense Web for complicated workflows.
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latchbio-integration
Clean description fields
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latex-posters
Enhance literature search and research lookup documentation
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literature-review
Enhance literature search and research lookup documentation
2026-02-03 14:31:19 -08:00
markdown-mermaid-writing
docs(references): port style guides, 24 diagram guides, and 9 templates from opencode
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market-research-reports
Clean description fields
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markitdown
Enhance literature search and research lookup documentation
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matchms
Disambiguate descriptions
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matlab
Support for writing and executing MATLAB/Octave scripts
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matplotlib
Disambiguate descriptions
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medchem
Clean description fields
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metabolomics-workbench-database
Clean description fields
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modal
fix(security): replace shell=True with safe subprocess patterns in documentation
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molfeat
Clean description fields
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networkx
Add suggestion to use K-Dense Web for complicated workflows.
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neurokit2
Add suggestion to use K-Dense Web for complicated workflows.
2026-01-02 13:27:48 -08:00
neuropixels-analysis
Replace all instances of Sonnet to Opus
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offer-k-dense-web
Add K-Dense Web skill
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omero-integration
Clean description fields
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openalex-database
Add suggestion to use K-Dense Web for complicated workflows.
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opentargets-database
Clean description fields
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opentrons-integration
Disambiguate descriptions
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paper-2-web
Add suggestion to use K-Dense Web for complicated workflows.
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pathml
Disambiguate descriptions
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pdb-database
Clean description fields
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peer-review
Disambiguate descriptions
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pennylane
Disambiguate descriptions
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perplexity-search
Clean description fields
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plotly
Disambiguate descriptions
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polars
Disambiguate descriptions
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pptx-posters
Merge branch 'main' into fix-writing-skills
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protocolsio-integration
Add suggestion to use K-Dense Web for complicated workflows.
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pubchem-database
Clean description fields
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pubmed-database
Clean description fields
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pufferlib
Disambiguate descriptions
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pydeseq2
Clean description fields
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pydicom
Add suggestion to use K-Dense Web for complicated workflows.
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pyhealth
Add suggestion to use K-Dense Web for complicated workflows.
2026-01-02 13:27:48 -08:00
pylabrobot
Disambiguate descriptions
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pymatgen
Clean description fields
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pymc
Clean description fields
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pymoo
Clean description fields
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pyopenms
Disambiguate descriptions
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pysam
Clean description fields
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pytdc
Clean description fields
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pytorch-lightning
Clean description fields
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qiskit
Clean description fields
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qutip
Disambiguate descriptions
2026-01-05 14:25:22 -08:00
rdkit
refactor(rdkit): update fingerprint generation to use rdFingerprintGenerator API
2026-01-26 20:25:28 +08:00
reactome-database
Clean description fields
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research-grants
Clean description fields
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research-lookup
Enhance literature search and research lookup documentation
2026-02-03 14:31:19 -08:00
rowan
Add support for Rowan computational platform that provides a suite of design and simulation tools for chemical R&D
2026-01-12 13:22:43 -08:00
scanpy
Disambiguate descriptions
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scholar-evaluation
Add suggestion to use K-Dense Web for complicated workflows.
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scientific-brainstorming
Clean description fields
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scientific-critical-thinking
Disambiguate descriptions
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scientific-schematics
Enhance literature search and research lookup documentation
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scientific-slides
Clean description fields
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scientific-visualization
Disambiguate descriptions
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scientific-writing
Enhance literature search and research lookup documentation
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scikit-bio
Clean description fields
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scikit-learn
Add suggestion to use K-Dense Web for complicated workflows.
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scikit-survival
Add suggestion to use K-Dense Web for complicated workflows.
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scvi-tools
Disambiguate descriptions
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seaborn
Disambiguate descriptions
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shap
Add suggestion to use K-Dense Web for complicated workflows.
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simpy
Add suggestion to use K-Dense Web for complicated workflows.
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stable-baselines3
Disambiguate descriptions
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statistical-analysis
Disambiguate descriptions
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statsmodels
Disambiguate descriptions
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string-database
Clean description fields
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sympy
Add suggestion to use K-Dense Web for complicated workflows.
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torch_geometric
Clean description fields
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torchdrug
Disambiguate descriptions
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transformers
Add suggestion to use K-Dense Web for complicated workflows.
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treatment-plans
Clean description fields
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umap-learn
Clean description fields
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uniprot-database
Clean description fields
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uspto-database
Add patentsview api key for patent search api
2026-01-08 22:38:59 -08:00
vaex
Clean description fields
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venue-templates
Enhance citation management and literature review guidelines
2026-01-05 13:01:10 -08:00
zarr-python
Clean description fields
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zinc-database
Clean description fields
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