skills/claude-scientific-skills
1
0
Fork 0
mirror of https://github.com/K-Dense-AI/claude-scientific-skills.git synced 2026-01-26 16:58:56 +08:00
Code Issues Packages Projects Releases Wiki Activity
Files
3bb0ee77bec7b247a0ebeda4024b94086de7616a
claude-scientific-skills/scientific-skills
History
Alper Yilmaz 3bb0ee77be updated CHEMBL function calls 
https://bioservices.readthedocs.io/en/latest/references.html#module-bioservices.chembl describes changes to functions after 1.6.0

also, get_compounds_by_chemblId fails when tested
2025-11-21 12:52:30 +03:00
..
aeon
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
alphafold-database
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
anndata
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
arboreto
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
astropy
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
benchling-integration
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
biomni
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
biopython
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
biorxiv-database
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
bioservices
updated CHEMBL function calls
2025-11-21 12:52:30 +03:00
cellxgene-census
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
chembl-database
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
clinicaltrials-database
Consolidate skills
2025-11-13 18:50:42 -08:00
clinpgx-database
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
clinvar-database
Consolidate skills
2025-11-13 18:50:42 -08:00
cobrapy
Consolidate skills
2025-11-13 18:50:42 -08:00
cosmic-database
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
dask
Consolidate skills
2025-11-13 18:50:42 -08:00
datacommons-client
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
datamol
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
deepchem
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
deeptools
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
denario
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
diffdock
Consolidate skills
2025-11-13 18:50:42 -08:00
dnanexus-integration
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
document-skills
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
drugbank-database
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
ena-database
Consolidate skills
2025-11-13 18:50:42 -08:00
ensembl-database
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
esm
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
etetoolkit
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
exploratory-data-analysis
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
fda-database
Consolidate skills
2025-11-13 18:50:42 -08:00
flowio
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
fluidsim
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
gene-database
Consolidate skills
2025-11-13 18:50:42 -08:00
geniml
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
geo-database
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
get-available-resources
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
gget
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
gtars
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
gwas-database
Consolidate skills
2025-11-13 18:50:42 -08:00
histolab
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
hmdb-database
Consolidate skills
2025-11-13 18:50:42 -08:00
hypogenic
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
hypothesis-generation
Consolidate skills
2025-11-13 18:50:42 -08:00
kegg-database
Consolidate skills
2025-11-13 18:50:42 -08:00
labarchive-integration
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
lamindb
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
latchbio-integration
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
literature-review
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
markitdown
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
matchms
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
matplotlib
Consolidate skills
2025-11-13 18:50:42 -08:00
medchem
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
metabolomics-workbench-database
Consolidate skills
2025-11-13 18:50:42 -08:00
modal
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
molfeat
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
networkx
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
neurokit2
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
omero-integration
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
openalex-database
Add support for OpenAlex
2025-11-19 13:38:32 -08:00
opentargets-database
Consolidate skills
2025-11-13 18:50:42 -08:00
opentrons-integration
Consolidate skills
2025-11-13 18:50:42 -08:00
paper-2-web
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
pathml
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
pdb-database
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
peer-review
Consolidate skills
2025-11-13 18:50:42 -08:00
perplexity-search
Add Perplexity search
2025-11-16 16:16:21 -08:00
polars
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
protocolsio-integration
Consolidate skills
2025-11-13 18:50:42 -08:00
pubchem-database
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
pubmed-database
Consolidate skills
2025-11-13 18:50:42 -08:00
pufferlib
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
pydeseq2
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
pydicom
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
pyhealth
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
pylabrobot
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
pymatgen
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
pymc
Consolidate skills
2025-11-13 18:50:42 -08:00
pymoo
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
pyopenms
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
pysam
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
pytdc
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
pytorch-lightning
Consolidate skills
2025-11-13 18:50:42 -08:00
rdkit
Consolidate skills
2025-11-13 18:50:42 -08:00
reactome-database/reactome-database
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
reportlab
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
scanpy
Consolidate skills
2025-11-13 18:50:42 -08:00
scholar-evaluation
Consolidate skills
2025-11-13 18:50:42 -08:00
scientific-brainstorming
Consolidate skills
2025-11-13 18:50:42 -08:00
scientific-critical-thinking
Consolidate skills
2025-11-13 18:50:42 -08:00
scientific-visualization
Consolidate skills
2025-11-13 18:50:42 -08:00
scientific-writing
Consolidate skills
2025-11-13 18:50:42 -08:00
scikit-bio
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
scikit-learn
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
scikit-survival
Consolidate skills
2025-11-13 18:50:42 -08:00
scvi-tools
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
seaborn
Consolidate skills
2025-11-13 18:50:42 -08:00
shap
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
simpy
Consolidate skills
2025-11-13 18:50:42 -08:00
stable-baselines3
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
statistical-analysis
Consolidate skills
2025-11-13 18:50:42 -08:00
statsmodels
Consolidate skills
2025-11-13 18:50:42 -08:00
string-database
Consolidate skills
2025-11-13 18:50:42 -08:00
sympy
Consolidate skills
2025-11-13 18:50:42 -08:00
tooluniverse
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
torch_geometric
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
torchdrug
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
transformers
Consolidate skills
2025-11-13 18:50:42 -08:00
umap-learn
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
uniprot-database
Consolidate skills
2025-11-13 18:50:42 -08:00
uspto-database
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
vaex
Consolidate skills
2025-11-13 18:50:42 -08:00
zarr-python
Updated installation instructions for all skills to always use uv pip install
2025-11-16 15:34:52 -08:00
zinc-database
Consolidate skills
2025-11-13 18:50:42 -08:00