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Clayton Young 509190118f fix(examples): correct quantile indices, variable shadowing, and test design in anomaly + covariates examples 
Anomaly detection fixes:
- Fix critical quantile index bug: index 0 is mean not q10; correct indices are q10=1, q20=2, q80=8, q90=9
- Redesign test: use all 36 months as context, inject 3 synthetic anomalies into future
- Result: 3 CRITICAL detected (was 11/12 — caused by test-set leakage + wrong indices)
- Update severity labels: CRITICAL = outside 80% PI, WARNING = outside 60% PI

Covariates fixes:
- Fix variable-shadowing bug: inner dict comprehension overwrote outer loop store_id
  causing all stores to get identical covariate arrays (store_A's price for everyone)
- Give each store a distinct price baseline (premium $12, standard $10, discount $7.50)
- Trim CONTEXT_LEN from 48 → 24 weeks; CSV now 108 rows (was 180)
- Add NOTE ON REAL DATA comment: temp file pattern for large external datasets

Both scripts regenerated with clean outputs.
2026-02-23 07:43:04 -05:00
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adaptyv
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aeon
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alphafold-database
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anndata
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arboreto
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astropy
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benchling-integration
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biopython
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biorxiv-database
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bioservices
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brenda-database
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cellxgene-census
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chembl-database
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cirq
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citation-management
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clinical-decision-support
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clinical-reports
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clinicaltrials-database
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clinpgx-database
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clinvar-database
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cobrapy
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cosmic-database
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dask
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datacommons-client
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datamol
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deepchem
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deeptools
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denario
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diffdock
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dnanexus-integration
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document-skills
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drugbank-database
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ena-database
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ensembl-database
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esm
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etetoolkit
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exploratory-data-analysis
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fda-database
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flowio
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fluidsim
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fred-economic-data
Add support for economic data form the Federal Reserve using FRED
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gene-database
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generate-image
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geniml
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geo-database
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geopandas
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get-available-resources
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gget
Fix description formatting in SKILL.md
2026-01-07 15:15:18 +08:00
gtars
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gwas-database
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histolab
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hmdb-database
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hypogenic
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hypothesis-generation
Enhance literature search and research lookup documentation
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imaging-data-commons
update to v1.3.1
2026-02-11 09:42:22 -05:00
infographics
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iso-13485-certification
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kegg-database
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labarchive-integration
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lamindb
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latchbio-integration
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latex-posters
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literature-review
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market-research-reports
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markitdown
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matchms
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matlab
Support for writing and executing MATLAB/Octave scripts
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matplotlib
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medchem
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metabolomics-workbench-database
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modal
fix(security): replace shell=True with safe subprocess patterns in documentation
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molfeat
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networkx
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neurokit2
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neuropixels-analysis
Replace all instances of Sonnet to Opus
2026-01-21 09:16:34 -05:00
offer-k-dense-web
Add K-Dense Web skill
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omero-integration
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openalex-database
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opentargets-database
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opentrons-integration
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paper-2-web
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pathml
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pdb-database
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peer-review
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pennylane
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perplexity-search
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plotly
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polars
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pptx-posters
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protocolsio-integration
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pubchem-database
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pubmed-database
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pufferlib
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pydeseq2
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pydicom
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pyhealth
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pylabrobot
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pymatgen
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pymc
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pymoo
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pyopenms
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pysam
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pytdc
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pytorch-lightning
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qiskit
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qutip
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rdkit
refactor(rdkit): update fingerprint generation to use rdFingerprintGenerator API
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reactome-database
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research-grants
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research-lookup
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rowan
Add support for Rowan computational platform that provides a suite of design and simulation tools for chemical R&D
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scanpy
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scholar-evaluation
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scientific-brainstorming
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scientific-critical-thinking
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scientific-schematics
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scientific-slides
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scientific-visualization
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scientific-writing
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scikit-bio
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scikit-learn
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scikit-survival
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scvi-tools
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seaborn
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shap
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simpy
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stable-baselines3
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statistical-analysis
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statsmodels
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string-database
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sympy
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timesfm-forecasting
fix(examples): correct quantile indices, variable shadowing, and test design in anomaly + covariates examples
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torch_geometric
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torchdrug
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transformers
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treatment-plans
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umap-learn
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uniprot-database
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uspto-database
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vaex
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venue-templates
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zarr-python
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zinc-database
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