skills/claude-scientific-skills
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claude-scientific-skills/scientific-packages
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Timothy Kassis 6ddea4786e Improve the anndata skill
2025-11-03 16:09:01 -08:00
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aeon
Improve the aeon skill
2025-11-03 15:59:29 -08:00
anndata
Improve the anndata skill
2025-11-03 16:09:01 -08:00
arboreto
Apply best practices
2025-10-21 12:50:07 -07:00
astropy
Better adherence to recommendations
2025-10-21 09:43:34 -07:00
biomni
Improved Biomni support
2025-10-22 08:38:06 -07:00
biopython
Updated skill descrtipotions to resolve possible conflicts in their use
2025-10-26 18:52:50 -07:00
bioservices
Updated skill descrtipotions to resolve possible conflicts in their use
2025-10-26 18:52:50 -07:00
cellxgene-census
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2025-10-21 12:50:07 -07:00
cobrapy
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2025-10-21 12:50:07 -07:00
dask
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2025-10-21 12:50:07 -07:00
datacommons-client
Add DataCommons which enables scientists to programmatically access nodes in the Data Commons knowledge graph.
2025-10-24 09:04:27 -07:00
datamol
Updated skill descrtipotions to resolve possible conflicts in their use
2025-10-26 18:52:50 -07:00
deepchem
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2025-10-21 12:50:07 -07:00
deeptools
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2025-10-21 12:50:07 -07:00
diffdock
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2025-10-21 12:50:07 -07:00
esm
Add ESM3 and ESM C models protein models
2025-10-23 09:10:34 -07:00
etetoolkit
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2025-10-21 12:50:07 -07:00
flowio
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2025-10-21 12:50:07 -07:00
gget
Updated skill descrtipotions to resolve possible conflicts in their use
2025-10-26 18:52:50 -07:00
histolab
Add support for HistoLab
2025-10-24 13:41:06 -07:00
hypogenic
Add hypothesis generation using HypoGeniC and HypoRefine
2025-10-28 12:53:43 -07:00
lamindb
Add support to LaminDB
2025-10-31 11:39:54 -07:00
markitdown
Add Markitdown skill to read all sorts of documents
2025-10-28 16:31:01 -07:00
matchms
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2025-10-21 12:50:07 -07:00
matplotlib
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2025-10-21 12:50:07 -07:00
medchem
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2025-10-21 12:50:07 -07:00
molfeat
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2025-10-21 12:50:07 -07:00
networkx
Add support for NetworkX for creating, analyzing, and visualizing complex networks and graphs.
2025-11-02 14:19:20 -08:00
neurokit2
Added support for NeuroKit2
2025-10-25 21:38:31 -07:00
paper-2-web
Add Paper2Web
2025-10-22 08:50:06 -07:00
pathml
Add support for PathML
2025-10-24 13:40:40 -07:00
polars
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2025-10-21 12:50:07 -07:00
pufferlib
Add support for PufferLib which is a high-performance, open-source Python toolkit that wraps complex RL environments to look like standard Gym/PettingZoo interfaces and supports massively parallel simulation (1M+ steps/sec) to accelerate deep reinforcement learning.
2025-11-02 14:52:06 -08:00
pydeseq2
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2025-10-21 12:50:07 -07:00
pydicom
Add support for PyDicom
2025-10-23 09:35:46 -07:00
pyhealth
Add support for PyHealth making healthcare AI simpler and more powerful
2025-10-23 09:50:07 -07:00
pylabrobot
Add support for PyLabRobot for lab automation
2025-10-25 21:23:47 -07:00
pymatgen
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2025-10-21 12:50:07 -07:00
pymc
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2025-10-21 12:50:07 -07:00
pymoo
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2025-10-21 12:50:07 -07:00
pyopenms
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2025-10-21 12:50:07 -07:00
pysam
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2025-10-21 12:50:07 -07:00
pytdc
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2025-10-21 12:50:07 -07:00
pytorch-lightning
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2025-10-21 12:50:07 -07:00
rdkit
Updated skill descrtipotions to resolve possible conflicts in their use
2025-10-26 18:52:50 -07:00
reportlab
Better adherence to recommendations
2025-10-21 09:43:34 -07:00
scanpy
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2025-10-21 12:50:07 -07:00
scikit-bio
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2025-10-21 12:50:07 -07:00
scikit-learn
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2025-10-21 12:50:07 -07:00
scikit-survival
Add scikit-survival for survival analysis allowing users to establish connections between covariates and time of an event
2025-10-23 10:02:16 -07:00
scvi-tools
Add ESM3 and ESM C models protein models
2025-10-23 09:10:34 -07:00
seaborn
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2025-10-21 12:50:07 -07:00
shap
Add SHAP for model explainability
2025-10-23 09:08:27 -07:00
simpy
Add SimPy a process-based discrete-event simulation framework
2025-10-23 09:26:44 -07:00
stable-baselines3
Add support for Stable-Baselines3, a PyTorch-based library providing reliable, well-tested implementations of popular deep reinforcement learning algorithms with a simple and consistent API for research and training.
2025-11-02 14:54:16 -08:00
statsmodels
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2025-10-21 12:50:07 -07:00
sympy
Add support for SymPY for symbolic mathematics that enables algebraic manipulation, equation solving, calculus, and symbolic computation directly in Python.
2025-11-02 14:30:20 -08:00
tooluniverse
Added full support for ToolUniverse. Claude Code can now use the tools it provide as it needs without the MCP being a gateway.
2025-10-22 14:59:27 -07:00
torch_geometric
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2025-10-21 12:50:07 -07:00
torchdrug
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2025-10-21 12:50:07 -07:00
transformers
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2025-10-21 12:50:07 -07:00
umap-learn
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2025-10-21 12:50:07 -07:00
vaex
Add support for Vaex for fast, memory-efficient exploration and visualization of large tabular datasets using lazy, out-of-core computation.
2025-11-02 14:43:20 -08:00
zarr-python
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2025-10-21 12:50:07 -07:00