Jeremy Leipzig 730531e0d7 Remove all reference documentation files and clean up references ...

- Delete references/population_genomics.md
- Remove all references to deleted documentation files
- Clean up References section since no reference files remain
- Simplify skill to standalone main file only

2026-02-24 11:30:31 -07:00

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adaptyv

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aeon

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alpha-vantage

Support Alpha Advantage for more financial data

2026-02-23 13:43:11 -08:00

alphafold-database

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anndata

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arboreto

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astropy

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benchling-integration

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biopython

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biorxiv-database

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bioservices

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brenda-database

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cellxgene-census

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chembl-database

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cirq

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citation-management

Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.

2026-02-23 12:36:05 -08:00

clinical-decision-support

Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.

2026-02-23 12:36:05 -08:00

clinical-reports

Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.

2026-02-23 12:36:05 -08:00

clinicaltrials-database

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clinpgx-database

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clinvar-database

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cobrapy

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cosmic-database

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dask

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datacommons-client

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datamol

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deepchem

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deeptools

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denario

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diffdock

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dnanexus-integration

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document-skills

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drugbank-database

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edgartools

Support EdgarTools to access and analyze SEC Edgar filings, XBRL financial statements, 10-K, 10-Q, and 8-K reports

2026-02-23 13:02:15 -08:00

ena-database

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ensembl-database

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esm

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etetoolkit

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exploratory-data-analysis

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fda-database

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flowio

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fluidsim

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fred-economic-data

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gene-database

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generate-image

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geniml

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geo-database

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geopandas

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get-available-resources

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gget

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gtars

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gwas-database

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hedgefundmonitor

Support for Hedge Fund Monitor from the Office of Financial Research

2026-02-23 13:32:09 -08:00

histolab

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hmdb-database

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hypogenic

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hypothesis-generation

Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.

2026-02-23 12:36:05 -08:00

imaging-data-commons

update to v1.3.1

2026-02-11 09:42:22 -05:00

infographics

Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.

2026-02-23 12:36:05 -08:00

iso-13485-certification

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kegg-database

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labarchive-integration

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lamindb

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latchbio-integration

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latex-posters

Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.

2026-02-23 12:36:05 -08:00

literature-review

Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.

2026-02-23 12:36:05 -08:00

markdown-mermaid-writing

Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.

2026-02-23 12:36:05 -08:00

market-research-reports

Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.

2026-02-23 12:36:05 -08:00

markitdown

Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.

2026-02-23 12:36:05 -08:00

matchms

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matlab

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matplotlib

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medchem

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metabolomics-workbench-database

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modal

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molfeat

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networkx

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neurokit2

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neuropixels-analysis

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offer-k-dense-web

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omero-integration

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open-notebook

Add open-notebook skill: self-hosted NotebookLM alternative (issue #56)

2026-02-23 00:18:19 +00:00

openalex-database

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opentargets-database

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opentrons-integration

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paper-2-web

Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.

2026-02-23 12:36:05 -08:00

pathml

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pdb-database

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peer-review

Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.

2026-02-23 12:36:05 -08:00

pennylane

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perplexity-search

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plotly

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polars

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pptx-posters

Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.

2026-02-23 12:36:05 -08:00

protocolsio-integration

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pubchem-database

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pubmed-database

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pufferlib

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pydeseq2

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pydicom

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pyhealth

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pylabrobot

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pymatgen

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pymc

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pymoo

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pyopenms

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pysam

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pytdc

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pytorch-lightning

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qiskit

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qutip

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rdkit

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reactome-database

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research-grants

Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.

2026-02-23 12:36:05 -08:00

research-lookup

Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.

2026-02-23 12:36:05 -08:00

rowan

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scanpy

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scholar-evaluation

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scientific-brainstorming

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scientific-critical-thinking

Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.

2026-02-23 12:36:05 -08:00

scientific-schematics

Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.

2026-02-23 12:36:05 -08:00

scientific-slides

Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.

2026-02-23 12:36:05 -08:00

scientific-visualization

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scientific-writing

Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.

2026-02-23 12:36:05 -08:00

scikit-bio

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scikit-learn

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scikit-survival

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scvi-tools

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seaborn

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shap

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simpy

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stable-baselines3

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statistical-analysis

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statsmodels

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string-database

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sympy

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tiledbvcf

Remove all reference documentation files and clean up references

2026-02-24 11:30:31 -07:00

timesfm-forecasting

Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.

2026-02-23 12:36:05 -08:00

torch_geometric

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torchdrug

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transformers

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treatment-plans

Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.

2026-02-23 12:36:05 -08:00

umap-learn

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uniprot-database

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usfiscaldata

Add support for FiscalData.treasury.gov

2026-02-23 13:20:34 -08:00

uspto-database

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vaex

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venue-templates

Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.

2026-02-23 12:36:05 -08:00

zarr-python

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zinc-database

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