mirror of
https://github.com/K-Dense-AI/claude-scientific-skills.git
synced 2026-01-26 16:58:56 +08:00
162 lines
6.4 KiB
JSON
162 lines
6.4 KiB
JSON
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{
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"name": "claude-scientific-skills",
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"owner": {
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"name": "Timothy Kassis",
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"email": "timothy.kassis@k-dense.ai"
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},
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"metadata": {
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"description": "Claude scientific skills from K-Dense Inc",
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"version": "1.64.0"
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},
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"plugins": [
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{
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"name": "scientific-packages",
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"description": "Collection of python scientific packages",
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"source": "./",
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"strict": false,
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"skills": [
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"./scientific-packages/aeon",
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"./scientific-packages/anndata",
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"./scientific-packages/arboreto",
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"./scientific-packages/astropy",
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"./scientific-packages/biomni",
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"./scientific-packages/biopython",
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"./scientific-packages/bioservices",
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"./scientific-packages/cellxgene-census",
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"./scientific-packages/cobrapy",
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"./scientific-packages/dask",
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"./scientific-packages/datacommons-client",
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"./scientific-packages/datamol",
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"./scientific-packages/deepchem",
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"./scientific-packages/deeptools",
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"./scientific-packages/diffdock",
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"./scientific-packages/esm",
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"./scientific-packages/etetoolkit",
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"./scientific-packages/flowio",
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"./scientific-packages/gget",
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"./scientific-packages/histolab",
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"./scientific-packages/matchms",
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"./scientific-packages/matplotlib",
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"./scientific-packages/medchem",
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"./scientific-packages/molfeat",
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"./scientific-packages/neurokit2",
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"./scientific-packages/paper-2-web",
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"./scientific-packages/pathml",
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"./scientific-packages/polars",
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"./scientific-packages/pydeseq2",
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"./scientific-packages/pydicom",
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"./scientific-packages/pyhealth",
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"./scientific-packages/pymatgen",
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"./scientific-packages/pymc",
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"./scientific-packages/pylabrobot",
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"./scientific-packages/pymoo",
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"./scientific-packages/pyopenms",
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"./scientific-packages/pysam",
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"./scientific-packages/pytdc",
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"./scientific-packages/pytorch-lightning",
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"./scientific-packages/rdkit",
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"./scientific-packages/reportlab",
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"./scientific-packages/scanpy",
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"./scientific-packages/scvi-tools",
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"./scientific-packages/scikit-bio",
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"./scientific-packages/scikit-learn",
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"./scientific-packages/scikit-survival",
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"./scientific-packages/seaborn",
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"./scientific-packages/shap",
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"./scientific-packages/simpy",
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"./scientific-packages/statsmodels",
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"./scientific-packages/torch_geometric",
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"./scientific-packages/torchdrug",
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"./scientific-packages/tooluniverse",
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"./scientific-packages/transformers",
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"./scientific-packages/umap-learn",
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"./scientific-packages/zarr-python"
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]
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},
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{
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"name": "scientific-databases",
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"description": "Collection of scientific databases",
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"source": "./",
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"strict": false,
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"skills": [
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"./scientific-databases/alphafold-database",
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"./scientific-databases/biorxiv-database",
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"./scientific-databases/chembl-database",
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"./scientific-databases/clinpgx-database",
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"./scientific-databases/clinvar-database",
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"./scientific-databases/clinicaltrials-database",
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"./scientific-databases/cosmic-database",
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"./scientific-databases/drugbank-database",
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"./scientific-databases/ena-database",
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"./scientific-databases/ensembl-database",
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"./scientific-databases/fda-database",
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"./scientific-databases/gene-database",
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"./scientific-databases/geo-database",
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"./scientific-databases/gwas-database",
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"./scientific-databases/hmdb-database",
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"./scientific-databases/kegg-database",
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"./scientific-databases/metabolomics-workbench-database",
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"./scientific-databases/opentargets-database",
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"./scientific-databases/pdb-database",
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"./scientific-databases/pubchem-database",
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"./scientific-databases/pubmed-database",
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"./scientific-databases/reactome-database",
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"./scientific-databases/string-database",
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"./scientific-databases/uniprot-database",
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"./scientific-databases/uspto-database",
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"./scientific-databases/zinc-database"
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]
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},
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{
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"name": "scientific-thinking",
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"description": "Collection of scientific thinking methodologies",
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"source": "./",
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"strict": false,
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"skills": [
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"./scientific-thinking/exploratory-data-analysis",
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"./scientific-thinking/hypothesis-generation",
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"./scientific-thinking/literature-review",
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"./scientific-thinking/peer-review",
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"./scientific-thinking/scholar-evaluation",
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"./scientific-thinking/scientific-brainstorming",
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"./scientific-thinking/scientific-critical-thinking",
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"./scientific-thinking/scientific-writing",
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"./scientific-thinking/statistical-analysis",
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"./scientific-thinking/scientific-visualization",
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"./scientific-thinking/document-skills/docx",
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"./scientific-thinking/document-skills/pdf",
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"./scientific-thinking/document-skills/pptx",
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"./scientific-thinking/document-skills/xlsx"
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]
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},
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{
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"name": "scientific-integrations",
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"description": "Collection of scientific platform integrations",
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"source": "./",
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"strict": false,
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"skills": [
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"./scientific-integrations/benchling-integration",
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"./scientific-integrations/dnanexus-integration",
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"./scientific-integrations/labarchive-integration",
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"./scientific-integrations/latchbio-integration",
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"./scientific-integrations/omero-integration",
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"./scientific-integrations/opentrons-integration",
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"./scientific-integrations/protocolsio-integration"
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]
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},
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{
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"name": "scientific-context-initialization",
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"description": "Always Auto-invoked skill that creates/updates workspace AGENT.md to instruct the agent to always search for existing skills before attempting any scientific task",
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"source": "./scientific-helpers/scientific-context-initialization",
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"strict": false
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},
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{
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"name": "get-available-resources",
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"description": "Detects and reports available system resources (CPU cores, GPUs, memory, disk space) to inform computational approach decisions",
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"source": "./scientific-helpers/get-available-resources",
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"strict": false
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}
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]
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}
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