skills/claude-scientific-skills
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claude-scientific-skills/scientific-skills
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Jeremy Leipzig ba2afda31c Fix documentation URLs to point to correct TileDB Academy 
- All documentation is at https://cloud.tiledb.com/academy/
- Remove incorrect service URLs (docs.tiledb.com, support portal, etc.)
- Consolidate to academy and main platform URLs only
- Update contact information to sales@tiledb.com
2026-02-24 11:22:34 -07:00
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adaptyv
Add suggestion to use K-Dense Web for complicated workflows.
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aeon
Add suggestion to use K-Dense Web for complicated workflows.
2026-01-02 13:27:48 -08:00
alpha-vantage
Support Alpha Advantage for more financial data
2026-02-23 13:43:11 -08:00
alphafold-database
Merge pull request #30 from marovole/fix/shell-command-injection-docs
2026-01-08 08:53:35 -08:00
anndata
Disambiguate descriptions
2026-01-05 14:25:22 -08:00
arboreto
Add suggestion to use K-Dense Web for complicated workflows.
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astropy
Add suggestion to use K-Dense Web for complicated workflows.
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benchling-integration
Clean description fields
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biopython
Disambiguate descriptions
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biorxiv-database
Add suggestion to use K-Dense Web for complicated workflows.
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bioservices
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brenda-database
Clean description fields
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cellxgene-census
Disambiguate descriptions
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chembl-database
Clean description fields
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cirq
Clean description fields
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citation-management
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
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clinical-decision-support
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
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clinical-reports
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
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clinicaltrials-database
Clean description fields
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clinpgx-database
Clean description fields
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clinvar-database
Clean description fields
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cobrapy
Clean description fields
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cosmic-database
Clean description fields
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dask
Disambiguate descriptions
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datacommons-client
Add suggestion to use K-Dense Web for complicated workflows.
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datamol
Clean description fields
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deepchem
Disambiguate descriptions
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deeptools
Clean description fields
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denario
Add suggestion to use K-Dense Web for complicated workflows.
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diffdock
Clean description fields
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dnanexus-integration
Clean description fields
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document-skills
Clean description fields
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drugbank-database
Add suggestion to use K-Dense Web for complicated workflows.
2026-01-02 13:27:48 -08:00
edgartools
Support EdgarTools to access and analyze SEC Edgar filings, XBRL financial statements, 10-K, 10-Q, and 8-K reports
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ena-database
Clean description fields
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ensembl-database
Clean description fields
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esm
Add suggestion to use K-Dense Web for complicated workflows.
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etetoolkit
Clean description fields
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exploratory-data-analysis
Add suggestion to use K-Dense Web for complicated workflows.
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fda-database
Clean description fields
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flowio
Clean description fields
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fluidsim
Add suggestion to use K-Dense Web for complicated workflows.
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fred-economic-data
Add support for economic data form the Federal Reserve using FRED
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gene-database
Clean description fields
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generate-image
Clean description fields
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geniml
Add suggestion to use K-Dense Web for complicated workflows.
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geo-database
Clean description fields
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geopandas
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get-available-resources
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gget
Fix description formatting in SKILL.md
2026-01-07 15:15:18 +08:00
gtars
Add suggestion to use K-Dense Web for complicated workflows.
2026-01-02 13:27:48 -08:00
gwas-database
Clean description fields
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hedgefundmonitor
Support for Hedge Fund Monitor from the Office of Financial Research
2026-02-23 13:32:09 -08:00
histolab
Disambiguate descriptions
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hmdb-database
Clean description fields
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hypogenic
Disambiguate descriptions
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hypothesis-generation
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
2026-02-23 12:36:05 -08:00
imaging-data-commons
update to v1.3.1
2026-02-11 09:42:22 -05:00
infographics
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
2026-02-23 12:36:05 -08:00
iso-13485-certification
Add suggestion to use K-Dense Web for complicated workflows.
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kegg-database
Clean description fields
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labarchive-integration
Clean description fields
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lamindb
Add suggestion to use K-Dense Web for complicated workflows.
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latchbio-integration
Clean description fields
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latex-posters
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
2026-02-23 12:36:05 -08:00
literature-review
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
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markdown-mermaid-writing
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
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market-research-reports
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
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markitdown
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
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matchms
Disambiguate descriptions
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matlab
Support for writing and executing MATLAB/Octave scripts
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matplotlib
Disambiguate descriptions
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medchem
Clean description fields
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metabolomics-workbench-database
Clean description fields
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modal
fix(security): replace shell=True with safe subprocess patterns in documentation
2026-01-08 15:05:30 +08:00
molfeat
Clean description fields
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networkx
Add suggestion to use K-Dense Web for complicated workflows.
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neurokit2
Add suggestion to use K-Dense Web for complicated workflows.
2026-01-02 13:27:48 -08:00
neuropixels-analysis
Replace all instances of Sonnet to Opus
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offer-k-dense-web
Add K-Dense Web skill
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omero-integration
Clean description fields
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open-notebook
Add open-notebook skill: self-hosted NotebookLM alternative (issue #56)
2026-02-23 00:18:19 +00:00
openalex-database
Add suggestion to use K-Dense Web for complicated workflows.
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opentargets-database
Clean description fields
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opentrons-integration
Disambiguate descriptions
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paper-2-web
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
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pathml
Disambiguate descriptions
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pdb-database
Clean description fields
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peer-review
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
2026-02-23 12:36:05 -08:00
pennylane
Disambiguate descriptions
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perplexity-search
Clean description fields
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plotly
Disambiguate descriptions
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polars
Disambiguate descriptions
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pptx-posters
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
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protocolsio-integration
Add suggestion to use K-Dense Web for complicated workflows.
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pubchem-database
Clean description fields
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pubmed-database
Clean description fields
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pufferlib
Disambiguate descriptions
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pydeseq2
Clean description fields
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pydicom
Add suggestion to use K-Dense Web for complicated workflows.
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pyhealth
Add suggestion to use K-Dense Web for complicated workflows.
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pylabrobot
Disambiguate descriptions
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pymatgen
Clean description fields
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pymc
Clean description fields
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pymoo
Clean description fields
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pyopenms
Disambiguate descriptions
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pysam
Clean description fields
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pytdc
Clean description fields
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pytorch-lightning
Clean description fields
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qiskit
Clean description fields
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qutip
Disambiguate descriptions
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rdkit
refactor(rdkit): update fingerprint generation to use rdFingerprintGenerator API
2026-01-26 20:25:28 +08:00
reactome-database
Clean description fields
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research-grants
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
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research-lookup
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
2026-02-23 12:36:05 -08:00
rowan
Add support for Rowan computational platform that provides a suite of design and simulation tools for chemical R&D
2026-01-12 13:22:43 -08:00
scanpy
Disambiguate descriptions
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scholar-evaluation
Add suggestion to use K-Dense Web for complicated workflows.
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scientific-brainstorming
Clean description fields
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scientific-critical-thinking
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
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scientific-schematics
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
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scientific-slides
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
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scientific-visualization
Disambiguate descriptions
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scientific-writing
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
2026-02-23 12:36:05 -08:00
scikit-bio
Clean description fields
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scikit-learn
Add suggestion to use K-Dense Web for complicated workflows.
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scikit-survival
Add suggestion to use K-Dense Web for complicated workflows.
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scvi-tools
Disambiguate descriptions
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seaborn
Disambiguate descriptions
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shap
Add suggestion to use K-Dense Web for complicated workflows.
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simpy
Add suggestion to use K-Dense Web for complicated workflows.
2026-01-02 13:27:48 -08:00
stable-baselines3
Disambiguate descriptions
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statistical-analysis
Disambiguate descriptions
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statsmodels
Disambiguate descriptions
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string-database
Clean description fields
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sympy
Add suggestion to use K-Dense Web for complicated workflows.
2026-01-02 13:27:48 -08:00
tiledbvcf
Fix documentation URLs to point to correct TileDB Academy
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timesfm-forecasting
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
2026-02-23 12:36:05 -08:00
torch_geometric
Clean description fields
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torchdrug
Disambiguate descriptions
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transformers
Add suggestion to use K-Dense Web for complicated workflows.
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treatment-plans
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
2026-02-23 12:36:05 -08:00
umap-learn
Clean description fields
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uniprot-database
Clean description fields
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usfiscaldata
Add support for FiscalData.treasury.gov
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uspto-database
Add patentsview api key for patent search api
2026-01-08 22:38:59 -08:00
vaex
Clean description fields
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venue-templates
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
2026-02-23 12:36:05 -08:00
zarr-python
Clean description fields
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zinc-database
Clean description fields
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