skills/claude-scientific-skills
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Clayton Young c7c5bc21ff feat(example): add working TimesFM forecast example with global temperature data 
- Add NOAA GISTEMP global temperature anomaly dataset (36 months, 2022-2024)
- Run TimesFM 1.0 PyTorch forecast for 2025 (12-month horizon)
- Generate fan chart visualization with 80%/90% confidence intervals
- Create comprehensive markdown report with findings and API notes

API Discovery:
- TimesFM 2.5 PyTorch checkpoint has file format issue (model.safetensors
  vs expected torch_model.ckpt)
- Working API uses TimesFmHparams + TimesFmCheckpoint + TimesFm() constructor
- Documented API in GitHub README differs from actual pip package

Includes:
- temperature_anomaly.csv (input data)
- forecast_output.csv (point forecast + quantiles)
- forecast_output.json (machine-readable output)
- forecast_visualization.png (LFS-tracked)
- run_forecast.py (reusable script)
- visualize_forecast.py (chart generation)
- run_example.sh (one-click runner)
- README.md (full report with findings)
2026-02-23 07:43:04 -05:00
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adaptyv
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aeon
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alphafold-database
Merge pull request #30 from marovole/fix/shell-command-injection-docs
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anndata
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arboreto
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astropy
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benchling-integration
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biopython
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biorxiv-database
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bioservices
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brenda-database
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cellxgene-census
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chembl-database
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cirq
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citation-management
Enhance citation management and literature review guidelines
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clinical-decision-support
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clinical-reports
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clinicaltrials-database
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clinpgx-database
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clinvar-database
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cobrapy
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cosmic-database
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dask
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datacommons-client
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datamol
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deepchem
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deeptools
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denario
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diffdock
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dnanexus-integration
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document-skills
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drugbank-database
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ena-database
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ensembl-database
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esm
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etetoolkit
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exploratory-data-analysis
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fda-database
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flowio
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fluidsim
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fred-economic-data
Add support for economic data form the Federal Reserve using FRED
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gene-database
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generate-image
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geniml
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geo-database
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geopandas
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get-available-resources
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gget
Fix description formatting in SKILL.md
2026-01-07 15:15:18 +08:00
gtars
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gwas-database
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histolab
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hmdb-database
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hypogenic
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hypothesis-generation
Enhance literature search and research lookup documentation
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imaging-data-commons
update to v1.3.1
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infographics
Add infographics skill for creating visual data representations
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iso-13485-certification
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kegg-database
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labarchive-integration
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lamindb
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latchbio-integration
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latex-posters
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literature-review
Enhance literature search and research lookup documentation
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markdown-mermaid-writing
docs(skill): add common pitfalls section with radar-beta syntax guide
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market-research-reports
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markitdown
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matchms
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matlab
Support for writing and executing MATLAB/Octave scripts
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matplotlib
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medchem
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metabolomics-workbench-database
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modal
fix(security): replace shell=True with safe subprocess patterns in documentation
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molfeat
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networkx
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neurokit2
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neuropixels-analysis
Replace all instances of Sonnet to Opus
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offer-k-dense-web
Add K-Dense Web skill
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omero-integration
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openalex-database
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opentargets-database
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opentrons-integration
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paper-2-web
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pathml
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pdb-database
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peer-review
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pennylane
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perplexity-search
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plotly
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polars
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pptx-posters
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protocolsio-integration
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pubchem-database
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pubmed-database
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pufferlib
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pydeseq2
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pydicom
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pyhealth
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pylabrobot
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pymatgen
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pymc
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pymoo
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pyopenms
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pysam
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pytdc
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pytorch-lightning
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qiskit
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qutip
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rdkit
refactor(rdkit): update fingerprint generation to use rdFingerprintGenerator API
2026-01-26 20:25:28 +08:00
reactome-database
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research-grants
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research-lookup
Enhance literature search and research lookup documentation
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rowan
Add support for Rowan computational platform that provides a suite of design and simulation tools for chemical R&D
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scanpy
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scholar-evaluation
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scientific-brainstorming
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scientific-critical-thinking
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scientific-schematics
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scientific-slides
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scientific-visualization
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scientific-writing
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scikit-bio
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scikit-learn
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scikit-survival
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scvi-tools
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seaborn
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shap
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simpy
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stable-baselines3
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statistical-analysis
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statsmodels
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string-database
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sympy
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timesfm-forecasting
feat(example): add working TimesFM forecast example with global temperature data
2026-02-23 07:43:04 -05:00
torch_geometric
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torchdrug
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transformers
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treatment-plans
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umap-learn
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uniprot-database
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uspto-database
Add patentsview api key for patent search api
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vaex
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venue-templates
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zarr-python
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zinc-database
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