skills/claude-scientific-skills
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cfffe4d166cde006828dcbdbb9279b1293bc79ce
claude-scientific-skills/scientific-skills
History
Timothy Kassis cfffe4d166 Refactor torch_geometric skill references and update skill name to 'torch-geometric' for consistency. Remove obsolete files related to the skill, including documentation and scripts.
2026-03-05 07:54:41 -08:00
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adaptyv
Cleanup
2026-03-03 08:20:03 -08:00
aeon
Cleanup
2026-03-03 08:20:03 -08:00
alpha-vantage
Support Alpha Advantage for more financial data
2026-02-23 13:43:11 -08:00
alphafold-database
Cleanup
2026-03-03 08:20:03 -08:00
anndata
Cleanup
2026-03-03 08:20:03 -08:00
arboreto
Cleanup
2026-03-03 08:20:03 -08:00
astropy
Cleanup
2026-03-03 08:20:03 -08:00
benchling-integration
Cleanup
2026-03-03 08:20:03 -08:00
bgpt-paper-search
Add BGPT paper search skill
2026-02-24 14:42:31 -07:00
bindingdb-database
Add scVelo RNA velocity analysis workflow and IQ-TREE reference documentation
2026-03-03 07:15:36 -05:00
biopython
Cleanup
2026-03-03 08:20:03 -08:00
biorxiv-database
Cleanup
2026-03-03 08:20:03 -08:00
bioservices
Cleanup
2026-03-03 08:20:03 -08:00
brenda-database
Cleanup
2026-03-03 08:20:03 -08:00
cbioportal-database
Add scVelo RNA velocity analysis workflow and IQ-TREE reference documentation
2026-03-03 07:15:36 -05:00
cellxgene-census
Cleanup
2026-03-03 08:20:03 -08:00
chembl-database
Cleanup
2026-03-03 08:20:03 -08:00
cirq
Cleanup
2026-03-03 08:20:03 -08:00
citation-management
Cleanup
2026-03-03 08:20:03 -08:00
clinical-decision-support
Cleanup
2026-03-03 08:20:03 -08:00
clinical-reports
Cleanup
2026-03-03 08:20:03 -08:00
clinicaltrials-database
Cleanup
2026-03-03 08:20:03 -08:00
clinpgx-database
Cleanup
2026-03-03 08:20:03 -08:00
clinvar-database
Cleanup
2026-03-03 08:20:03 -08:00
cobrapy
Cleanup
2026-03-03 08:20:03 -08:00
consciousness-council
feat: add cognitive science skills — consciousness-council, dhdna-profiler, what-if-oracle
2026-03-02 17:16:09 +02:00
cosmic-database
Cleanup
2026-03-03 08:20:03 -08:00
dask
Cleanup
2026-03-03 08:20:03 -08:00
datacommons-client
Cleanup
2026-03-03 08:20:03 -08:00
datamol
Cleanup
2026-03-03 08:20:03 -08:00
deepchem
Cleanup
2026-03-03 08:20:03 -08:00
deeptools
Cleanup
2026-03-03 08:20:03 -08:00
denario
Cleanup
2026-03-03 08:20:03 -08:00
depmap
Add scVelo RNA velocity analysis workflow and IQ-TREE reference documentation
2026-03-03 07:15:36 -05:00
dhdna-profiler
feat: add cognitive science skills — consciousness-council, dhdna-profiler, what-if-oracle
2026-03-02 17:16:09 +02:00
diffdock
Cleanup
2026-03-03 08:20:03 -08:00
dnanexus-integration
Cleanup
2026-03-03 08:20:03 -08:00
document-skills
Cleanup
2026-03-03 08:20:03 -08:00
drugbank-database
Cleanup
2026-03-03 08:20:03 -08:00
edgartools
Support EdgarTools to access and analyze SEC Edgar filings, XBRL financial statements, 10-K, 10-Q, and 8-K reports
2026-02-23 13:02:15 -08:00
ena-database
Cleanup
2026-03-03 08:20:03 -08:00
ensembl-database
Cleanup
2026-03-03 08:20:03 -08:00
esm
Cleanup
2026-03-03 08:20:03 -08:00
etetoolkit
Cleanup
2026-03-03 08:20:03 -08:00
exploratory-data-analysis
Cleanup
2026-03-03 08:20:03 -08:00
fda-database
Cleanup
2026-03-03 08:20:03 -08:00
flowio
Cleanup
2026-03-03 08:20:03 -08:00
fluidsim
Cleanup
2026-03-03 08:20:03 -08:00
fred-economic-data
Add support for economic data form the Federal Reserve using FRED
2026-01-27 10:41:40 -08:00
gene-database
Cleanup
2026-03-03 08:20:03 -08:00
generate-image
Cleanup
2026-03-03 08:20:03 -08:00
geniml
Cleanup
2026-03-03 08:20:03 -08:00
geo-database
Cleanup
2026-03-03 08:20:03 -08:00
geomaster
Add GeoMaster: Comprehensive Geospatial Science Skill
2026-03-01 13:42:41 +05:00
geopandas
Cleanup
2026-03-03 08:20:03 -08:00
get-available-resources
Cleanup
2026-03-03 08:20:03 -08:00
gget
Cleanup
2026-03-03 08:20:03 -08:00
ginkgo-cloud-lab
Support for Ginkgo Cloud Lab
2026-03-02 09:53:41 -08:00
glycoengineering
Add scVelo RNA velocity analysis workflow and IQ-TREE reference documentation
2026-03-03 07:15:36 -05:00
gnomad-database
Add scVelo RNA velocity analysis workflow and IQ-TREE reference documentation
2026-03-03 07:15:36 -05:00
gtars
Cleanup
2026-03-03 08:20:03 -08:00
gtex-database
Add scVelo RNA velocity analysis workflow and IQ-TREE reference documentation
2026-03-03 07:15:36 -05:00
gwas-database
Cleanup
2026-03-03 08:20:03 -08:00
hedgefundmonitor
Support for Hedge Fund Monitor from the Office of Financial Research
2026-02-23 13:32:09 -08:00
histolab
Cleanup
2026-03-03 08:20:03 -08:00
hmdb-database
Cleanup
2026-03-03 08:20:03 -08:00
hypogenic
Cleanup
2026-03-03 08:20:03 -08:00
hypothesis-generation
Cleanup
2026-03-03 08:20:03 -08:00
imaging-data-commons
update to v1.3.1
2026-02-11 09:42:22 -05:00
infographics
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
2026-02-23 12:36:05 -08:00
interpro-database
Add scVelo RNA velocity analysis workflow and IQ-TREE reference documentation
2026-03-03 07:15:36 -05:00
iso-13485-certification
Cleanup
2026-03-03 08:20:03 -08:00
jaspar-database
Add scVelo RNA velocity analysis workflow and IQ-TREE reference documentation
2026-03-03 07:15:36 -05:00
kegg-database
Cleanup
2026-03-03 08:20:03 -08:00
labarchive-integration
Cleanup
2026-03-03 08:20:03 -08:00
lamindb
Cleanup
2026-03-03 08:20:03 -08:00
latchbio-integration
Cleanup
2026-03-03 08:20:03 -08:00
latex-posters
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
2026-02-23 12:36:05 -08:00
literature-review
Cleanup
2026-03-03 08:20:03 -08:00
markdown-mermaid-writing
Update allowed-tools formatting in SKILL.md files across multiple scientific skills to improve consistency and readability.
2026-02-23 12:36:05 -08:00
market-research-reports
Cleanup
2026-03-03 08:20:03 -08:00
markitdown
Cleanup
2026-03-03 08:20:03 -08:00
matchms
Cleanup
2026-03-03 08:20:03 -08:00
matlab
Support for writing and executing MATLAB/Octave scripts
2026-01-05 10:15:22 -08:00
matplotlib
Cleanup
2026-03-03 08:20:03 -08:00
medchem
Cleanup
2026-03-03 08:20:03 -08:00
metabolomics-workbench-database
Cleanup
2026-03-03 08:20:03 -08:00
modal
Cleanup
2026-03-03 08:20:03 -08:00
molecular-dynamics
Add scVelo RNA velocity analysis workflow and IQ-TREE reference documentation
2026-03-03 07:15:36 -05:00
molfeat
Cleanup
2026-03-03 08:20:03 -08:00
monarch-database
Add scVelo RNA velocity analysis workflow and IQ-TREE reference documentation
2026-03-03 07:15:36 -05:00
networkx
Cleanup
2026-03-03 08:20:03 -08:00
neurokit2
Cleanup
2026-03-03 08:20:03 -08:00
neuropixels-analysis
Cleanup
2026-03-03 08:20:03 -08:00
offer-k-dense-web
Add K-Dense Web skill
2026-01-05 18:20:10 -08:00
omero-integration
Cleanup
2026-03-03 08:20:03 -08:00
open-notebook
Fix architecture diagram in markdown
2026-02-23 22:52:10 -05:00
openalex-database
Cleanup
2026-03-03 08:20:03 -08:00
opentargets-database
Cleanup
2026-03-03 08:20:03 -08:00
opentrons-integration
Cleanup
2026-03-03 08:20:03 -08:00
paper-2-web
Cleanup
2026-03-03 08:20:03 -08:00
parallel-web
Added parallel-web skill
2026-03-01 07:36:19 -08:00
pathml
Cleanup
2026-03-03 08:20:03 -08:00
pdb-database
Cleanup
2026-03-03 08:20:03 -08:00
peer-review
Cleanup
2026-03-03 08:20:03 -08:00
pennylane
Cleanup
2026-03-03 08:20:03 -08:00
perplexity-search
Cleanup
2026-03-03 08:20:03 -08:00
phylogenetics
Add scVelo RNA velocity analysis workflow and IQ-TREE reference documentation
2026-03-03 07:15:36 -05:00
plotly
Cleanup
2026-03-03 08:20:03 -08:00
polars
Cleanup
2026-03-03 08:20:03 -08:00
pptx-posters
Cleanup
2026-03-03 08:20:03 -08:00
protocolsio-integration
Cleanup
2026-03-03 08:20:03 -08:00
pubchem-database
Cleanup
2026-03-03 08:20:03 -08:00
pubmed-database
Cleanup
2026-03-03 08:20:03 -08:00
pufferlib
Cleanup
2026-03-03 08:20:03 -08:00
pydeseq2
Cleanup
2026-03-03 08:20:03 -08:00
pydicom
Cleanup
2026-03-03 08:20:03 -08:00
pyhealth
Cleanup
2026-03-03 08:20:03 -08:00
pylabrobot
Cleanup
2026-03-03 08:20:03 -08:00
pymatgen
Cleanup
2026-03-03 08:20:03 -08:00
pymc
Update PyMC skill name and description for clarity and consistency
2026-03-05 07:53:32 -08:00
pymoo
Cleanup
2026-03-03 08:20:03 -08:00
pyopenms
Cleanup
2026-03-03 08:20:03 -08:00
pysam
Cleanup
2026-03-03 08:20:03 -08:00
pytdc
Cleanup
2026-03-03 08:20:03 -08:00
pytorch-lightning
Cleanup
2026-03-03 08:20:03 -08:00
pyzotero
Update README and documentation to reflect the addition of the pyzotero skill and increment skill count from 147 to 148. Bump version to 2.24.0 in marketplace.json.
2026-02-27 09:38:51 -08:00
qiskit
Cleanup
2026-03-03 08:20:03 -08:00
qutip
Cleanup
2026-03-03 08:20:03 -08:00
rdkit
Cleanup
2026-03-03 08:20:03 -08:00
reactome-database
Cleanup
2026-03-03 08:20:03 -08:00
research-grants
Cleanup
2026-03-03 08:20:03 -08:00
research-lookup
Added parallel-web skill
2026-03-01 07:36:19 -08:00
rowan
Add support for Rowan computational platform that provides a suite of design and simulation tools for chemical R&D
2026-01-12 13:22:43 -08:00
scanpy
Cleanup
2026-03-03 08:20:03 -08:00
scholar-evaluation
Cleanup
2026-03-03 08:20:03 -08:00
scientific-brainstorming
Cleanup
2026-03-03 08:20:03 -08:00
scientific-critical-thinking
Cleanup
2026-03-03 08:20:03 -08:00
scientific-schematics
Cleanup
2026-03-03 08:20:03 -08:00
scientific-slides
Cleanup
2026-03-03 08:20:03 -08:00
scientific-visualization
Cleanup
2026-03-03 08:20:03 -08:00
scientific-writing
Cleanup
2026-03-03 08:20:03 -08:00
scikit-bio
Cleanup
2026-03-03 08:20:03 -08:00
scikit-learn
Cleanup
2026-03-03 08:20:03 -08:00
scikit-survival
Cleanup
2026-03-03 08:20:03 -08:00
scvelo
Add scVelo RNA velocity analysis workflow and IQ-TREE reference documentation
2026-03-03 07:15:36 -05:00
scvi-tools
Cleanup
2026-03-03 08:20:03 -08:00
seaborn
Cleanup
2026-03-03 08:20:03 -08:00
shap
Cleanup
2026-03-03 08:20:03 -08:00
simpy
Cleanup
2026-03-03 08:20:03 -08:00
stable-baselines3
Cleanup
2026-03-03 08:20:03 -08:00
statistical-analysis
Cleanup
2026-03-03 08:20:03 -08:00
statsmodels
Cleanup
2026-03-03 08:20:03 -08:00
string-database
Cleanup
2026-03-03 08:20:03 -08:00
sympy
Cleanup
2026-03-03 08:20:03 -08:00
tiledbvcf
Remove all reference documentation files and clean up references
2026-02-24 11:30:31 -07:00
timesfm-forecasting
Cleanup
2026-03-03 08:20:03 -08:00
torch-geometric
Refactor torch_geometric skill references and update skill name to 'torch-geometric' for consistency. Remove obsolete files related to the skill, including documentation and scripts.
2026-03-05 07:54:41 -08:00
torchdrug
Cleanup
2026-03-03 08:20:03 -08:00
transformers
Cleanup
2026-03-03 08:20:03 -08:00
treatment-plans
Cleanup
2026-03-03 08:20:03 -08:00
umap-learn
Cleanup
2026-03-03 08:20:03 -08:00
uniprot-database
Cleanup
2026-03-03 08:20:03 -08:00
usfiscaldata
Add support for FiscalData.treasury.gov
2026-02-23 13:20:34 -08:00
uspto-database
Cleanup
2026-03-03 08:20:03 -08:00
vaex
Cleanup
2026-03-03 08:20:03 -08:00
venue-templates
Cleanup
2026-03-03 08:20:03 -08:00
what-if-oracle
feat: add cognitive science skills — consciousness-council, dhdna-profiler, what-if-oracle
2026-03-02 17:16:09 +02:00
zarr-python
Cleanup
2026-03-03 08:20:03 -08:00
zinc-database
Cleanup
2026-03-03 08:20:03 -08:00