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Reference: Complete Context Initialization Template
This is the complete reference template for what gets added to the workspace root AGENT.md file.
Agent Scientific Skills - Working Instructions
IMPORTANT: Use Available Skills First
Before attempting any scientific task, use available skills.
Database Access Tasks
Before writing any database access code, use available skills in this repository.
This repository contains skills for 24+ scientific databases. Each skill includes:
- API endpoints and authentication patterns
- Working code examples
- Best practices and rate limits
- Example scripts
Always use available database skills before writing custom database access code.
Scientific Package Usage
Before writing analysis code with scientific packages, use available skills in this repository.
This repository contains skills for 40+ scientific Python packages. Each skill includes:
- Installation instructions
- Complete API usage examples
- Best practices and common patterns
- Working scripts and reference documentation
Always use available package skills before writing custom analysis code.
Laboratory Platform Integration
Before writing any platform integration code, use available skills in this repository.
This repository contains skills for 6+ laboratory platforms and cloud services. Each skill includes:
- Authentication and setup instructions
- API access patterns
- Working integration examples
- Platform-specific best practices
Always use available integration skills before writing custom platform code.
Scientific Analysis & Research Methods
Before attempting any analysis, writing, or research task, use available methodology skills in this repository.
This repository contains skills for scientific methodologies including:
- Data analysis frameworks (EDA, statistical analysis)
- Research methodologies (hypothesis generation, brainstorming, critical thinking)
- Communication skills (scientific writing, visualization, peer review)
- Document processing (DOCX, PDF, PPTX, XLSX)
Always use available methodology skills before attempting scientific analysis or writing tasks.
This file is auto-generated by context-initialization skills. It ensures the agent uses available skills before attempting to solve scientific tasks from scratch.