Andrey Fedorov
1d306c59cf
Update to include new index available from idc-index
2026-01-23 17:05:50 -05:00
Andrey Fedorov
b71988fcdf
Added Imaging Data Commons skill
2026-01-22 18:26:30 -05:00
Timothy Kassis
cd537c1af6
Replace all instances of Sonnet to Opus
2026-01-21 09:16:34 -05:00
Timothy Kassis
c5413a6b5c
Remove Biomni due to incompatibilities
2026-01-21 09:11:38 -05:00
Timothy Kassis
497232fbc1
Merge pull request #32 from K-Dense-AI/add-open-source-acknowledgements
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Add open source acknowledgements
2026-01-15 20:44:16 -08:00
Haoxuan "Orion" Li
2a42585d11
docs: fix README text symbols
2026-01-15 16:05:02 -08:00
Haoxuan "Orion" Li
8578c44724
Merge branch 'main' into add-open-source-acknowledgements
2026-01-15 16:01:38 -08:00
Haoxuan "Orion" Li
b4e35897ae
docs: add acknowledgements and sponsor information on open source projects referenced
2026-01-15 16:00:45 -08:00
Timothy Kassis
25f29ac3db
Update readme
2026-01-15 12:49:04 -08:00
Timothy Kassis
bbe8a15cf7
Update README.md to include a link to a detailed comparison of K-Dense Web and Claude, and enhance contribution guidelines for adherence to the Agent Skills Specification.
2026-01-14 09:53:20 -08:00
Timothy Kassis
955a36ac82
Update README.md to enhance plugin installation instructions and add management commands
2026-01-12 17:17:47 -08:00
Timothy Kassis
e2e00231da
Add support for Rowan computational platform that provides a suite of design and simulation tools for chemical R&D
2026-01-12 13:22:43 -08:00
Timothy Kassis
f086d9f499
Merge pull request #31 from shao-shuai/fix/uspto-database
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Add patentsview api key for patent search api
2026-01-09 08:57:21 -08:00
shao-shuai
68f8f709f3
Add patentsview api key for patent search api
2026-01-08 22:38:59 -08:00
Timothy Kassis
a7221bb237
Merge pull request #30 from marovole/fix/shell-command-injection-docs
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fix(security): Replace shell=True with safe subprocess patterns in documentation
2026-01-08 08:53:35 -08:00
marovole
b6a6d698db
fix(security): replace shell=True with safe subprocess patterns in documentation
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## Summary
Fix command injection vulnerabilities in documentation examples by replacing
shell=True with safe list-based subprocess calls.
## Changes
### alphafold-database/SKILL.md
- Replace shell=True with list-form subprocess.run()
- Add input validation for taxonomy_id parameter
- Add security warning note with link to Python docs
### modal/references/web-endpoints.md
- Replace shell=True with list-form subprocess.Popen()
- Add security warning note
## Security
These changes prevent potential command injection if users copy these examples
with untrusted input. The new patterns follow Python security best practices.
2026-01-08 15:05:30 +08:00
Timothy Kassis
38c1560c7b
Merge pull request #29 from K-Dense-AI/orion/add-k-dense-web-gif
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Add K-Dense Web GIF to README
2026-01-07 20:38:47 -08:00
Haoxuan "Orion" Li
7232cf73a9
docs: add K-Dense Web GIF
2026-01-07 17:13:23 -08:00
Timothy Kassis
29536568d4
Merge pull request #28 from Jacobluke-/patch-1
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Fix typo in gget/SKILL.md description
2026-01-07 08:56:08 -08:00
Jacob Luke
912bdc7afa
Fix description formatting in SKILL.md
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Updated description formatting in SKILL.md
2026-01-07 15:15:18 +08:00
Jacob Luke
7942c59146
Fix typo in gget/SKILL.md description
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Fix typo to avoid YAML: mapping values are not allowed in this context at line 2 column 92
2026-01-07 15:08:58 +08:00
Timothy Kassis
808578ba03
Enhance README.md with detailed comparison of features between the local repo and K-Dense Web, highlighting benefits such as zero setup, cloud compute, and advanced workflows.
2026-01-06 21:01:58 -08:00
Timothy Kassis
2cb6f2e645
Bump version
2026-01-05 18:21:49 -08:00
Timothy Kassis
87497a3c60
Add K-Dense Web skill
2026-01-05 18:20:10 -08:00
Timothy Kassis
ca49c8c105
Update README.md to clarify capabilities and usage instructions for Claude Code and MCP clients
2026-01-05 17:23:58 -08:00
Timothy Kassis
9ab5b29dc5
Merge pull request #26 from K-Dense-AI/fix-writing-skills
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Fix pptx-posters SKILL.md with correct content
2026-01-05 15:47:03 -08:00
Timothy Kassis
90aea1b0a5
Merge branch 'main' into fix-writing-skills
2026-01-05 15:46:55 -08:00
Timothy Kassis
5ef0ccddc2
Clean description fields
2026-01-05 14:29:10 -08:00
Timothy Kassis
9cb0c2f934
Disambiguate descriptions
2026-01-05 14:25:22 -08:00
Vinayak Agarwal
7fff998fe6
Fix pptx-posters SKILL.md with correct content from claude-scientific-writer
2026-01-05 14:11:43 -08:00
Timothy Kassis
15d9e4699a
Update examples
2026-01-05 13:49:00 -08:00
Timothy Kassis
e268d8db9b
Writing enhancements
2026-01-05 13:33:11 -08:00
Timothy Kassis
1d716b0375
Merge pull request #25 from K-Dense-AI/fix-writing-skills
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Merge skills from claude-scientific-writer
2026-01-05 13:31:55 -08:00
Vinayak Agarwal
c127b737a5
Remove extra md files from markitdown
2026-01-05 13:07:50 -08:00
Vinayak Agarwal
5b52a8dd23
Remove test scripts and summary files
2026-01-05 13:06:20 -08:00
Vinayak Agarwal
3439a21f57
Enhance citation management and literature review guidelines
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- Updated SKILL.md in citation management to include best practices for identifying seminal and high-impact papers, emphasizing citation count thresholds, venue quality tiers, and author reputation indicators.
- Expanded literature review SKILL.md to prioritize high-impact papers, detailing citation metrics, journal tiers, and author reputation assessment.
- Added comprehensive evaluation strategies for paper impact and quality in literature_search_strategies.md, including citation count significance and journal impact factor guidance.
- Improved research lookup scripts to prioritize results based on citation count, venue prestige, and author reputation, enhancing the quality of research outputs.
2026-01-05 13:01:10 -08:00
Timothy Kassis
d243a12564
Merge pull request #24 from backtrue/feature/add-nstc-support
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feat(research-grants): Add comprehensive Taiwan NSTC proposal support
2026-01-05 12:38:29 -08:00
Timothy Kassis
70375367d6
Support for writing and executing MATLAB/Octave scripts
2026-01-05 10:15:22 -08:00
backtrue
4427270a71
feat(research-grants): Add comprehensive Taiwan NSTC proposal support
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- Add new nstc_guidelines.md with official requirements and practical insights
- Include CM03 format specifications and page limits by field
- Integrate LaTeX templates (CTAN package, Overleaf templates)
- Add practical writing strategies from three expert reviewers:
* Prof. Huang You-Ping (NPU): Scoring thresholds and section strategies
* Prof. Guo Yao-Huang: Closed-loop logic and KPI formulation
* President Wei Yao-Hui (Mackay): SMART principles and review dimensions
- Include budget preparation guidance and common pitfalls
- Update SKILL.md to reference NSTC in overview and agency list
This comprehensive guide provides 700+ lines of actionable guidance for
Taiwan NSTC (formerly MOST/NSC) research proposal writing.
2026-01-06 00:34:59 +09:00
Timothy Kassis
9827af22ad
Update readme
2026-01-02 19:09:54 -08:00
Timothy Kassis
58a32ff246
Update readme
2026-01-02 19:09:01 -08:00
Timothy Kassis
8f337f1574
Clarify licensing terms in README.md to specify that while the repository is MIT licensed, individual skills may have different licenses. Added a section on individual skill licenses to ensure users understand their compliance responsibilities.
2026-01-02 13:50:33 -08:00
Timothy Kassis
6de317a90c
Add suggestion to use K-Dense Web for complicated workflows.
2026-01-02 13:27:48 -08:00
Timothy Kassis
805b1e1e0b
Add compatibility field to some of the skills
2025-12-31 15:15:59 -08:00
Timothy Kassis
9a89e01aba
Update license metadata field
2025-12-31 15:10:41 -08:00
Timothy Kassis
2621ee329d
Add skill author
2025-12-31 13:57:51 -08:00
Timothy Kassis
57bde764fe
Added ISO 13485 certification prep skill
2025-12-29 11:12:50 -08:00
Timothy Kassis
4fc6ac7727
Merge pull request #18 from robotlearning123/feature/neuropixels-analysis
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Add neuropixels-analysis skill for extracellular electrophysiology
2025-12-18 11:31:11 -08:00
Robert
95a3b74b3b
Move Neuropixels-Analysis to new Neuroscience category
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Create new "🧠 Neuroscience & Electrophysiology" category for better
classification. Neuropixels is research neuroscience (animal models,
invasive recordings) rather than clinical healthcare AI.
- Remove from Healthcare AI section
- Add new Neuroscience & Electrophysiology section
- Keep NeuroKit2 in Healthcare AI (surface biosignals, clinical focus)
🤖 Generated with [Claude Code](https://claude.com/claude-code )
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com >
2025-12-17 11:20:00 -05:00
Robert
1e00b1536e
Fix SpikeInterface API compatibility in neuropixels_pipeline.py
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- Change stream_name to stream_id in read_spikeglx() call
- Change output_folder to folder in run_sorter() call
These parameters were renamed in SpikeInterface ≥0.100.
🤖 Generated with [Claude Code](https://claude.com/claude-code )
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com >
2025-12-17 11:13:09 -05:00
