Commit Graph

18 Commits

Author SHA1 Message Date
Timothy Kassis
9347d99355 Improve generate-image description 2025-11-30 09:36:44 -05:00
Timothy Kassis
90de96a99b Add support for generating scientific illustrations using Nano Banan Pro and Flux.2 Pro 2025-11-30 09:30:58 -05:00
Timothy Kassis
8d82c83a1a Merge pull request #11 from aledlie/main
refactor: replace manual argv parsing with argparse
2025-11-30 08:52:18 -05:00
Timothy Kassis
7e8deebf96 Add support for Qiskit from IBM: software stack for quantum computing and algorithms research. Build, optimize, and execute quantum workloads at scale. 2025-11-30 08:46:41 -05:00
Timothy Kassis
7763491813 Add support for PennyLane: a cross-platform library for quantum computing, quantum machine learning, and quantum chemistry. 2025-11-30 08:27:24 -05:00
Timothy Kassis
16e47a1755 Add support for Cirq: library for writing, manipulating, and optimizing quantum circuits, and then running them on quantum computers and quantum simulators. 2025-11-30 08:02:58 -05:00
Timothy Kassis
a077cee836 Add support for QuTiP: an open-source software for simulating the dynamics of open quantum systems. 2025-11-30 07:46:17 -05:00
Timothy Kassis
7caef7df68 Fix Reactome database nesting 2025-11-30 06:28:41 -05:00
Alyshia Ledlie
bf4267161f refactor: replace manual argv parsing with argparse
- Convert uniprot_client.py to use argparse module
- Convert peds_client.py to use argparse module
- Convert trademark_client.py to use argparse module
- Add mutually exclusive argument groups for better UX
- Implement comprehensive help text with examples
- Add short and long argument options for all commands
- Improve error handling with proper parser.error() calls

Replaces error-prone manual sys.argv parsing with robust
argparse implementation for better user experience and
input validation.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-29 01:13:05 -05:00
Timothy Kassis
6ac2a15e39 Add support for GeoPandas 2025-11-27 18:57:26 -05:00
Timothy Kassis
41f272c2bd Add Plotly support 2025-11-27 18:47:08 -05:00
Timothy Kassis
ea638c5618 Add support for Adaptyv for protein design 2025-11-24 19:52:45 -05:00
Alper Yilmaz
3bb0ee77be updated CHEMBL function calls
https://bioservices.readthedocs.io/en/latest/references.html#module-bioservices.chembl describes changes to functions after 1.6.0

also, get_compounds_by_chemblId fails when tested
2025-11-21 12:52:30 +03:00
Timothy Kassis
65b39d45d6 Add support for OpenAlex 2025-11-19 13:38:32 -08:00
Timothy Kassis
c078c98ad2 Add Perplexity search 2025-11-16 16:16:21 -08:00
Timothy Kassis
2fc3e6a88e Updated installation instructions for all skills to always use uv pip install 2025-11-16 15:34:52 -08:00
Timothy Kassis
d94f21c51f Add support for fluidsim for computational fluid dynamics 2025-11-13 19:46:29 -08:00
Timothy Kassis
8be6c6c307 Consolidate skills 2025-11-13 18:50:42 -08:00