Commit Graph

97 Commits

Author SHA1 Message Date
Vinayak Agarwal
c85faf039a Update marketplace.json to version 2.10.0 and reorganize scientific skills, adding new skills for citation management, clinical decision support, and research documentation while restoring previously removed skills. 2025-12-11 20:00:59 -08:00
Timothy Kassis
78331e1b37 Remove all writing skills for upcoming upgrade 2025-12-07 13:54:58 -08:00
Timothy Kassis
6560f1d779 Change Flux.2-dev to flex since dev does not exist 2025-12-04 14:50:30 -08:00
Timothy Kassis
49567890a6 Add BRENDA enzyme database 2025-12-03 17:29:05 -08:00
Timothy Kassis
90de96a99b Add support for generating scientific illustrations using Nano Banan Pro and Flux.2 Pro 2025-11-30 09:30:58 -05:00
Timothy Kassis
7e8deebf96 Add support for Qiskit from IBM: software stack for quantum computing and algorithms research. Build, optimize, and execute quantum workloads at scale. 2025-11-30 08:46:41 -05:00
Timothy Kassis
7763491813 Add support for PennyLane: a cross-platform library for quantum computing, quantum machine learning, and quantum chemistry. 2025-11-30 08:27:24 -05:00
Timothy Kassis
16e47a1755 Add support for Cirq: library for writing, manipulating, and optimizing quantum circuits, and then running them on quantum computers and quantum simulators. 2025-11-30 08:02:58 -05:00
Timothy Kassis
a077cee836 Add support for QuTiP: an open-source software for simulating the dynamics of open quantum systems. 2025-11-30 07:46:17 -05:00
Timothy Kassis
7caef7df68 Fix Reactome database nesting 2025-11-30 06:28:41 -05:00
Timothy Kassis
6ac2a15e39 Add support for GeoPandas 2025-11-27 18:57:26 -05:00
Timothy Kassis
41f272c2bd Add Plotly support 2025-11-27 18:47:08 -05:00
Timothy Kassis
ea638c5618 Add support for Adaptyv for protein design 2025-11-24 19:52:45 -05:00
Timothy Kassis
65b39d45d6 Add support for OpenAlex 2025-11-19 13:38:32 -08:00
Timothy Kassis
c078c98ad2 Add Perplexity search 2025-11-16 16:16:21 -08:00
Timothy Kassis
2fc3e6a88e Updated installation instructions for all skills to always use uv pip install 2025-11-16 15:34:52 -08:00
Timothy Kassis
d94f21c51f Add support for fluidsim for computational fluid dynamics 2025-11-13 19:46:29 -08:00
Timothy Kassis
63f257d81e Consolidate plugins 2025-11-13 18:57:02 -08:00
Timothy Kassis
cc99fdb57d Add support for Modal so researchers can scale compute on demand for heavy computational tasks beyond running locally 2025-11-10 10:57:05 -08:00
Timothy Kassis
82663ee1de Bump version 2025-11-07 09:37:59 -08:00
Timothy Kassis
1225ddecf1 Add support for both geniml and gtars 2025-11-04 10:22:03 -08:00
Timothy Kassis
63a4293f1a Add support for the Denario AI scientist 2025-11-03 17:04:20 -08:00
Timothy Kassis
d57129ca3f Bump version 2025-11-03 16:21:47 -08:00
Timothy Kassis
862445f531 Add support for Stable-Baselines3, a PyTorch-based library providing reliable, well-tested implementations of popular deep reinforcement learning algorithms with a simple and consistent API for research and training. 2025-11-02 14:54:16 -08:00
Timothy Kassis
b8c4d2bae1 Add support for PufferLib which is a high-performance, open-source Python toolkit that wraps complex RL environments to look like standard Gym/PettingZoo interfaces and supports massively parallel simulation (1M+ steps/sec) to accelerate deep reinforcement learning. 2025-11-02 14:52:06 -08:00
Timothy Kassis
27d6ee387f Add support for Vaex for fast, memory-efficient exploration and visualization of large tabular datasets using lazy, out-of-core computation. 2025-11-02 14:43:20 -08:00
Timothy Kassis
f32b3f8b42 Add support for SymPY for symbolic mathematics that enables algebraic manipulation, equation solving, calculus, and symbolic computation directly in Python. 2025-11-02 14:30:20 -08:00
Timothy Kassis
ed2d1c4aeb Add support for NetworkX for creating, analyzing, and visualizing complex networks and graphs. 2025-11-02 14:19:20 -08:00
Timothy Kassis
7e3fae3ad1 Add support to LaminDB 2025-10-31 11:39:54 -07:00
Timothy Kassis
346010a1bf Add Markitdown skill to read all sorts of documents 2025-10-28 16:31:01 -07:00
Timothy Kassis
82901e9fbe Add hypothesis generation using HypoGeniC and HypoRefine 2025-10-28 12:53:43 -07:00
Timothy Kassis
981823a71a Add ScholarEval as a thinking framework 2025-10-28 10:45:34 -07:00
Timothy Kassis
1f03feda5c Add protocols.io integration 2025-10-26 11:09:03 -07:00
Timothy Kassis
44285238c4 Fix context initialization by using AGENTS.md instead of AGENT.md 2025-10-26 10:18:45 -07:00
Timothy Kassis
04d528c4bc Added support for NeuroKit2 2025-10-25 21:38:31 -07:00
Timothy Kassis
a5c2ed9bb6 Add literature review skill 2025-10-25 10:55:36 -07:00
Timothy Kassis
564bd39835 Add support for HistoLab 2025-10-24 13:41:06 -07:00
Timothy Kassis
ca6fd369d7 Add DrugBank access 2025-10-24 09:04:43 -07:00
Timothy Kassis
d923063309 Change license to MIT allowing commercial use! 2025-10-23 20:48:01 -07:00
Timothy Kassis
43dc67a316 Version bump 2025-10-23 10:02:31 -07:00
Timothy Kassis
ee73143b53 Add scikit-survival for survival analysis allowing users to establish connections between covariates and time of an event 2025-10-23 10:02:16 -07:00
Timothy Kassis
b1df506eba Add support for PyHealth making healthcare AI simpler and more powerful 2025-10-23 09:50:07 -07:00
Timothy Kassis
bb1c9f4573 Add support for PyDicom 2025-10-23 09:35:46 -07:00
Timothy Kassis
6cb25aea28 Add SimPy a process-based discrete-event simulation framework 2025-10-23 09:26:44 -07:00
Timothy Kassis
92b4e024d1 Addition of ESM, SHAP, scvi-tools...and much more! 2025-10-23 09:12:41 -07:00
Timothy Kassis
3fbd9ba6a9 Add utility skill to get system resources 2025-10-23 09:12:01 -07:00
Timothy Kassis
87a608730c Add support for bioRxiv database search and paper downloading 2025-10-23 08:51:45 -07:00
Timothy Kassis
0943c243bb Added full support for ToolUniverse. Claude Code can now use the tools it provide as it needs without the MCP being a gateway. 2025-10-22 14:59:27 -07:00
Timothy Kassis
0b5a648e98 Add Paper2Web 2025-10-22 08:50:06 -07:00
Timothy Kassis
77822efeed Improved Biomni support 2025-10-22 08:38:06 -07:00